| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2578 |
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| Symbol | |
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| ID | 4279485 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 3082491 |
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| End bp | 3083174 |
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| Gene Length | 684 bp |
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| Protein Length | 227 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 638135371 |
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| Product | phage shock protein A, PspA |
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| Protein accession | YP_751257 |
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| Protein GI | 114563744 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG1842] Phage shock protein A (IM30), suppresses sigma54-dependent transcription |
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| TIGRFAM ID | [TIGR02977] phage shock protein A |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGGAATTT TCTCTCGCTT CGCAGATATC GTTAATTCTA ATATCAGCGC AATACTTGAT
AAAGCCGAAG ATCCAGAAAA AATGGTCCGT CTTATCATTC AAGAAATGGA AGACACACTT
GTTGAAGTAC GTTCAACCTC CGCTAAAGTA TTGGCAGAGA AAAAAGAATT ACTTCGTCGG
ATTGCTCGTG TTCAAGAGCA AGTTCAAGAT TGGCAGAATA AAGCTGAGTT AGCGTTATCC
AAAGATCGTG AAGACTTAGC CAAAGCCGCG TTGAGTGAAA AGCAAAAAAC AGTGGGTTTA
TTGCAAACAC TTGAAATGGA ACTGCAAGTT GTTGAAGAGC ATGTCGCTCG TTTAAAAGAT
GAAATCGCTC AACTTCAAGA AAAATTGAAT GATGCTCGTG CTCGTCAAAA AACCATCATA
ATGCGTAAGC AAACTGCCAC TTCACGTTTA GAAGTCAAAA AGCAGCTTGA TTCAAGCAAA
ATCGATGATG CAATGATGAA GTTTGAACAA TACGAGCGCC GAGTTGAAGG ACTTGAAGCA
CAAGTAGAAT CATATGATTT AGGTAAAAAG AACGTTCTAG CTGACGAGTT TGCAGCATTA
GAAGCAGAAG ATTCTGTGAA TGATGAATTA GCAGCATTAA AAGCAAAAAT GAGTGCGAAA
GCACAACCTA AATCTAAAGC GTAA
|
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| Protein sequence | MGIFSRFADI VNSNISAILD KAEDPEKMVR LIIQEMEDTL VEVRSTSAKV LAEKKELLRR
IARVQEQVQD WQNKAELALS KDREDLAKAA LSEKQKTVGL LQTLEMELQV VEEHVARLKD
EIAQLQEKLN DARARQKTII MRKQTATSRL EVKKQLDSSK IDDAMMKFEQ YERRVEGLEA
QVESYDLGKK NVLADEFAAL EAEDSVNDEL AALKAKMSAK AQPKSKA
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