| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2562 |
|---|
| Symbol | |
|---|
| ID | 4279470 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 3066395 |
|---|
| End bp | 3067084 |
|---|
| Gene Length | 690 bp |
|---|
| Protein Length | 229 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 638135356 |
|---|
| Product | pseudouridine synthase, Rsu |
|---|
| Protein accession | YP_751242 |
|---|
| Protein GI | 114563729 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
|---|
| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGTCTTG ATCGATTTAT TTGTAAAAGT ACTGAGCTAG TAAAGTATGA CGCGATCCAG
CTAATTCATA ATGGTGAGGT GTTCGTTAAT GGTGTGGTTG TCAGGAATGA AGCTGTTCAA
GTTCATGAAA ATAATGACAT CAGCTTAAAC GGTCAAAAGC TTGCAGCTCG AGCGTTTCGT
TATATGTTAA TCAATAAACC TGCCAATACT CTTTGTTCTA ATGTCGATGG TGTCTATCCG
TCGCTATTCT CATTAATTGA CGTCGAACGA CCATCTGAGT TGCATATTGC CGGAAGGTTA
GATGCCAATA CAACTGGGTT AGTGCTTATT ACCGATGATG GCCGTTGGAC ATTTGCTATC
ACGTCCCCGT CTGGACAATG CCATAAAGTT TACCGGGTTA AATTAGCTAA GCCGATAGCA
GCAGATGCCG GAGAGTCTTT TTTACAAGGC ATTGCTTTGC AAGGGGAGCA AGAGCTGACA
TTACCGGCAC AGTTGCAAAT TATCACACCA CAAGAAGTAT TACTGACCTT AACTGAAGGT
AAGTTTCATC AAGTAAAAAG AATGTTTGCT GCGGTGGGCA ATAAAGTGGT GTCACTGCAT
CGTGAAAGTA TTGGTGCTGT GAGTGTCGAT GTAGCCGAAG GGGAGTGGCG TTATTTAAGT
GTAGATGAAG TTCAGTCTTT TTATACATAA
|
|---|
| Protein sequence | MRLDRFICKS TELVKYDAIQ LIHNGEVFVN GVVVRNEAVQ VHENNDISLN GQKLAARAFR
YMLINKPANT LCSNVDGVYP SLFSLIDVER PSELHIAGRL DANTTGLVLI TDDGRWTFAI
TSPSGQCHKV YRVKLAKPIA ADAGESFLQG IALQGEQELT LPAQLQIITP QEVLLTLTEG
KFHQVKRMFA AVGNKVVSLH RESIGAVSVD VAEGEWRYLS VDEVQSFYT
|
|---|
| |