| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2557 |
|---|
| Symbol | |
|---|
| ID | 4279465 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 3061806 |
|---|
| End bp | 3063020 |
|---|
| Gene Length | 1215 bp |
|---|
| Protein Length | 404 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 638135351 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_751237 |
|---|
| Protein GI | 114563724 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0628] Predicted permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATGGAT TACAACAATC GCCCATGGCT GTACGAAGTT TTGTGGTGAT GGCTTGCGTA
GTGATTATTT TGGCTGGAAT TAAAACGGCC AGCCCAATAG TGGTGCCGTT TGTATTATCT
GCATTTTTAG CGGTTATTTG TAATCCTGCT ATTGTGTTGA TGACGCGCTA CCGTATTCCT
AAATGGTTAT CGATCATCTT AATGATGGGA TTTATTGTGT TAATGGGCTT GTGGCTGGCC
AGTTTAGTGG GCAGTTCGGT AACTGAGTTT TCCAAAGAAA TGCCCAAGTA TCGGGAGCAA
TTGATTGAAC AATTTGCGTG GATCCTTGAA AAACTGCAAG ATTTTAATAT CCAGATTTCT
CAACAAAAAG TACTCGATTA TTTTGACCCC GGCATGGCGT TATCCATGAC CACCAATATG
TTGTCTGGTG TTGGCAATGT GATGGCTAAT TTATTCCTGA TTATTTTGAC TATCGTATTT
ATGTTATTTG AAGCGCAATC AATGCCTAGA AAGTTTCATT TAGCCCTTGA TGCTCCAGAT
AAGCGTTTAA AGCAAATCGA CAAATTCTTG CAGTCGGTTA ATCAATATAT GGTGATTAAA
ACCCTTGTCA GTTTAGCAAC AGCAGTGGTT GTTGGTATCG GTTTGACAAT CATTGGCGTT
GACTATGCTT TGTTATGGGC AGTCATCGCT TTTCTGTTTA ATTATATTCC TAATATTGGT
TCTATTATTG CCGCAATTCC TGCTGTGTTA TTGGCTTTTA TCCAAATGGG CCCAGGGGCT
GCAGGTATTA CCGGTTTATT GTATGTGGGT ACCAATATGG TGATGGGTAA CATGGTTGAA
CCCCGTTTTA TGGGGCGTGG TTTAGGCTTG TCTACCTTAG TGGTTTTTTT ATCATTGATT
TTTTGGGGTT GGCTGCTTGG CTCTGTCGGC ATGTTGCTGT CGGTACCCTT AACCATGATT
GTTAAGATTG GTCTTGAATC GAGCGACTCG GGCAATTGGC TGGCAATTTT GTTGTCGGAT
GATAGTGATG ACTCATTTAA TGAATCCGCT AATAGTGTTA AAGCAGAAGC CGAAATTGCA
GCTGAAGATG AACACACAAA TGACGATGAC GAAAAGGTTA ATAATGACGT TGATAGTGGA
GTCAGTAGTG ACGTTGATAA TGACCATAGC GTGGACAGTG ACGCTAAAGC TAAGTCATCA
ACCACCAATG CATAA
|
|---|
| Protein sequence | MNGLQQSPMA VRSFVVMACV VIILAGIKTA SPIVVPFVLS AFLAVICNPA IVLMTRYRIP
KWLSIILMMG FIVLMGLWLA SLVGSSVTEF SKEMPKYREQ LIEQFAWILE KLQDFNIQIS
QQKVLDYFDP GMALSMTTNM LSGVGNVMAN LFLIILTIVF MLFEAQSMPR KFHLALDAPD
KRLKQIDKFL QSVNQYMVIK TLVSLATAVV VGIGLTIIGV DYALLWAVIA FLFNYIPNIG
SIIAAIPAVL LAFIQMGPGA AGITGLLYVG TNMVMGNMVE PRFMGRGLGL STLVVFLSLI
FWGWLLGSVG MLLSVPLTMI VKIGLESSDS GNWLAILLSD DSDDSFNESA NSVKAEAEIA
AEDEHTNDDD EKVNNDVDSG VSSDVDNDHS VDSDAKAKSS TTNA
|
|---|
| |