| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2550 |
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| Symbol | ddl |
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| ID | 4279458 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 3055342 |
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| End bp | 3056352 |
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| Gene Length | 1011 bp |
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| Protein Length | 336 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 638135344 |
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| Product | D-alanyl-alanine synthetase A |
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| Protein accession | YP_751230 |
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| Protein GI | 114563717 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1181] D-alanine-D-alanine ligase and related ATP-grasp enzymes |
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| TIGRFAM ID | [TIGR01205] D-alanine--D-alanine ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.281568 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCCAAAGA TTAATCTGCT GTTATTGTGC GGCGGTGGCG GTGCAGAGCA CGATATTTCG
TTAATGTCTG CACGTTTTTT TGAGTCATCA CTGGCAAAGT CAGATAAATT TTCGGTACTT
AAGTTAGTAC TCGATAAACA TGGTCATTAC CACACTGAAG ACGGTAAATT ATGCGACCTG
ACTAATCGTC GTGAAATTCG TTTTGAAGAT AACAGTACAC CAGCATGGTC AGTTGATTAT
GTGATCCCGT GTATTCATGG TTTCCCGGGT GAAACCGGCG ATATTCAATC ATACTTTAAC
TTAATACAAC TGCCCTACTT TGGTTGTGAA TCTGAAGCCT CAAGTAATTG TTTTAACAAA
ATCACCGCTA AAATGTGGTT TTCAGCTTTA GGCGTCCCAA ACACGCCTTA CATCTTTTTA
CATCAACTAG ATGATGATGC AATCAAGCAA ACTGAAACGG CATTTGATAA TTGGGGATCT
GTTTTCGTTA AAGCAGCATC ACAAGGATCG TCTGTGGGAT GCTATAAAGT CGATGTGAAA
GCCAATATCG CTAACGTACT TAAGGATGCA TTCAGTTATG CACCTTACGT TGTGGTTGAG
CAAACCATCC ATGCGCGTGA ATTAGAGGTC GCCGTATATC AATACCAGGG TGAAGTGGTC
GCTACCTTAC CGGGTGAGAT TATTTGCGAC AGTAATACCT TTTATTCATT TGATGAAAAG
TACGCTACAA ATAGTAAGGC TCGCACCGAC GTTGTTGCTG ATAACCTAAG CCCAGAGATC
AGTCAGCTGA TCCGTGATTA CGCGGTAAAA GCCTTTAAAG GGATGAAGTT ACGTCACTTG
TCGCGCATCG ATTTCTTTTT AACTGCCGAT AACCAAATTC TCTTGAATGA AATTAACACC
TTCCCTGGGT TAACGCCTAT TTCAATGTTC CCGAAAATGT TGCAAAACCA TGGACATAAT
TTCACTGAAT ATTTAATTGA TGTGATTGGA CAACAGGTTG ATTTAACGTA A
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| Protein sequence | MPKINLLLLC GGGGAEHDIS LMSARFFESS LAKSDKFSVL KLVLDKHGHY HTEDGKLCDL
TNRREIRFED NSTPAWSVDY VIPCIHGFPG ETGDIQSYFN LIQLPYFGCE SEASSNCFNK
ITAKMWFSAL GVPNTPYIFL HQLDDDAIKQ TETAFDNWGS VFVKAASQGS SVGCYKVDVK
ANIANVLKDA FSYAPYVVVE QTIHARELEV AVYQYQGEVV ATLPGEIICD SNTFYSFDEK
YATNSKARTD VVADNLSPEI SQLIRDYAVK AFKGMKLRHL SRIDFFLTAD NQILLNEINT
FPGLTPISMF PKMLQNHGHN FTEYLIDVIG QQVDLT
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