| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2534 |
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| Symbol | |
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| ID | 4279443 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 3033265 |
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| End bp | 3037095 |
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| Gene Length | 3831 bp |
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| Protein Length | 1276 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638135329 |
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| Product | exodeoxyribonuclease V, beta subunit |
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| Protein accession | YP_751215 |
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| Protein GI | 114563702 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
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| TIGRFAM ID | [TIGR00609] exodeoxyribonuclease V, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACGCTA TTACCGTGAC ACCGCTTAAT GCCCTCACCT TACCGTTTAG CGGTTCCAGC
TTAATTGAAG CCAGTGCTGG TACAGGGAAA ACCTATACTA TTTCCGGTTT GTATTTACGT
TTATTGTTAG GCCATGGTGG TAAAGCACCG TTAAGTTGTG AGCAAATTTT GGTGGTAACC
TTCACCAACG CCGCCACCGA AGAACTCAGA GACCGAATTC GTAAGCGGAT TAACCTAGCG
TTTAAACGCT TTTTAGGCTT AGCCGTCAAT GATGAGTTTA TTGAACAGCT TTACCAAGAC
ACATCGGAAG ATGAACGGCC TATTGCATTA AGACGCTTAG ACTTAGCGTT AAAGTCGTTA
GATGAAGCGG CTATTTTTAC TATTCACGCC TTTTGCCAAC GCGTATTGTC AGACATGGCA
TTTGAGTCGT CATTACTATT TGAGTCCGAA TTTACCCTCG ATGACAGTGA GTTTTTACAC
CATGCAGTGC GCGATTTCTG GCGTGAAGTC TGTTATCCCT TACCGCCCTT TTTAGCCCAA
GCCATTAGTG ATGTGTTTGC CGAACCTGAT GTGTTAGCAC AAAAACTGCG ACCGTTATTA
GGTGCAAGCC AAGCGGTGTT GTCAAAGCAG CCTCTGGCCT TTAAAACCTT ACAACAACAG
CTAAGCCAAA GTATCAGCCG CTTTACCTTA TTGTGGCAAA GCCTGCACGA CAGCACCCTT
GAATTATTGC AATCGCTACC ATTAAACGGT CAACGTTTTG GTAAAGGCGC CGACGGCTAC
CCTAAACTTA GCCAACTGTT TGATAGTATT AGTAACTGGG TGAAATTTGG CCAAGGATTA
CCGCCAATAA AAGCGCTGGA GCAATTGGCA TTATCCGAGC TTAAACTCAA TAAAGGTGGC
GTTATCCCCA GTGCGGATGA AGCGCCGTTA CTTGATCATA TTGAGCGCTT ACTTGAGTTA
ATTAATCAGC TTATTCCGTC ATTTTTAGTG CGCGCCCGAG AGGGAATTCG CCAACGCTTT
GCTGGCCAAA AACAGCAACG CAATTTAATG ACACCCGATG ACCTATTGCT CAGTTTAGCC
ATGGCGCTCA GCCAAAACCC AATCACCCTA GCCCATGCCA TTGCTAAGCG TTTTCCGGTC
GCATTAATTG ATGAGTTCCA AGACACCGAT CCACTACAAT TCACCATTTT TAATCAGGTG
TATCAACAGC CGTTAGCATC ACAACTGGAC CTAACCGCAG ATGCAAGGGT GAATAGCCCA
GATGATGACA GTAAAAGTAA TGATGATAAT GGTAATGACA ACATTGGTAA TGACGCTAAC
AAGGGGCGCT TAAGTTTATT AATGATTGGC GATCCTAAGC AGGCTATTTA TGCTTTCCGT
GGTGCCGATA TTTACACTTA TATTGCCGCG CGCCAACAAA CACAGGCTCA TTATAATCTT
GACACCAATT ACCGCTCATC GACTCAATTA GTCAATGGCG TTAATCAGCT ATTTAGCCAA
CATCAAGATC CGTTTATTAG CCAAGCTATC CCCTATGATA TTGTTAAAAC CCCATCATCG
GCAGCCAATA AACACCTAAG TGAAGCGACA ACAAATCCTA CAGCGTTGCG GATCCGCTTA
TTAGCCGAAG ACGATGTTAA TGGCCTCAAT AAAACTACCG CAAGACAACG CTTAGCCGCT
GATGCTGCCA GTGAAATAAA GCGCTTACTC ACCGAAGCGC AACAAGGATT ATGTAAAGTT
AATAACAGCA TTGAACAGGA AGCTAAACCG CTCATTGCCA AAGACATTGC CATATTGGTG
CGCGACCGTA ACGAAGCGGC CGTGATGAAA GCGGAATTAT CAGCACGTAA AATTGGCGCG
GTATTTTTAA GCCGAGACAG TGTATTTAAC ACCATTGAAG CCCGTGAAAT GGCTATTTTA
TTGTATGCCT TAGCCACGCC TAAAGATGAA CGTGCTATCC GCGCCGCACT GGCCACTGAG
CTTGTCGGCT TTAATGCCCA GCGGATCCAT CAATTTAACC AAGATGAAGA ACAGCGTCAG
CAGGTATTAG ATCAATTCAC TCATTGGCAT CAGTTATGGC AACAACGCGG CGTTATGCCT
GCGCTGCTTA ACTTTGCCAG CGAAACCAAA CTGATCCATC GTTATCTGTC GCAATCTGTC
ACGGCTGACA TCAATAATGA CAGTACTTAT AGCAGCAATA ATGACAACAA TAGTGACAAT
AGCTTTAATG ATGCTGATGA CGACAACGCA GCAGATCTTA AAGCCTCAGG TGAAAGACGC
TTAACCGACT TTAGGCATTT AGCCGAATTA CTGCAGCAAA AGGCCACTGA GCTAGATGGT
AGCAGCGCCC TAATCAATTG GTACGAGCAA CAACTGATTG GTAACAATGG TGGTGATGAG
CAGCAACTGC GCTTAGAAAG CGAACAGAAC TTGGTGCAAA TTGTCACTAT TCATAAAAGT
AAGGGCTTAG AATATCCGGT CTGTTTTGTG CCGTTTGTCA GCTTAGCCCG TGGTAATAAA
AAACGCCCTG CGCCAATGAT GTACCATAAA AATGAGCAGC TCATATGGGA TATCGACGCC
ACCGACGAAG GCTGGGAACA ACTTAAACAA GAAACCCTCG CTGAAGATTT ACGCCTACTG
TATGTGGCGT TAACACGGCC GGTTTACGTG TGTTATTTGT ATATTGCTAA CCAAAGCCGT
CAATTAAAGG CGGGGATCAG CAGCCAATTA CATGAAACAG GTATTGGTTA TCTGTTGGGC
ATTACCGACA AGAAAACTGA CTTTGCTCTT ATTCAAGCCA AAGTGAATGC AATTGCCACC
TTACCAGCGA TGAGTGTGGA ATGCTTAGGC AACGATATTG ACGATTCAGT GCTCGCCGAT
ATCCACGACA ATAATGACCC GCTAGTGGCC AAAAAAGTCA CTCGAGTACA AAGCCTTGCT
TGGCGAGTGG GCAGTTATTC TGGCTTGGTA AAACATCTTC CTCACGAGAG AGTCGCGCCC
GGTGCCGACG ATGAAGACTT CACCGATGAG TTAATCCAAT TACAGTTACA AGATGAACTC
ACCAGCGAAC CCGAACTTGA TCGTTTTACC TTTGAACGTG GCGCCAATGC CGGTAGTTTT
ATGCATTTAG TGTTAGAACT GTTTGATTTT ACCCAGGCAA ACACCGAGCT GACACCTGCG
CTAACGAAAG CCATGAAACA ATATGGGTTT GACGAAGCCC TATGGCAACA GCCGCTAATG
ACGTGGTATC AGCAAATATT GGTCGCACCG CTGTTTATTG AGCCATCGTC AGAGGACACA
TCACTGACAT TAAGCCAATT AGGCATGAAG CAAAAAATGG TCGAAATGGA GTTTTACTTG
CCTATTTCAA CCTTACAAGC ATCGCAATTA AATCATATTT TGCAACAGCA CGGTTATGTC
GCTGGACTCG ACTTTGATAC TTTAAAAGGC ATGTTAAAAG GCTTTATCGA TTTAACCTTT
GAGCACAAAG GCCAATTTTA TATTGCCGAT TATAAGTCCA ACCATTTGGG CGATAACTAT
AGCGACTACA CTCACTCAGC CATGGCTAAA GCCATTGATG CTCATCGTTA TAATTTGCAA
TACATCTTGT ATACCTTGGC GTTGCATCGT TACTTATCGC TTAGATTACC AAACTACAAT
TATCAGCAAC ATATTGGCGG CTGCTATTAC CTGTTTTTAC GCGGCATGCA TCCTGAGCAT
CCTGGCGCAG GGGTGTTTTA TGACAAACCA CCGCAAGCGT TAATCGAACA ACTCGACCGT
TTATTTACAG GTAATACAGA CAATCGTGCG CCGGAGACGT CATCATGCTA A
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| Protein sequence | MDAITVTPLN ALTLPFSGSS LIEASAGTGK TYTISGLYLR LLLGHGGKAP LSCEQILVVT
FTNAATEELR DRIRKRINLA FKRFLGLAVN DEFIEQLYQD TSEDERPIAL RRLDLALKSL
DEAAIFTIHA FCQRVLSDMA FESSLLFESE FTLDDSEFLH HAVRDFWREV CYPLPPFLAQ
AISDVFAEPD VLAQKLRPLL GASQAVLSKQ PLAFKTLQQQ LSQSISRFTL LWQSLHDSTL
ELLQSLPLNG QRFGKGADGY PKLSQLFDSI SNWVKFGQGL PPIKALEQLA LSELKLNKGG
VIPSADEAPL LDHIERLLEL INQLIPSFLV RAREGIRQRF AGQKQQRNLM TPDDLLLSLA
MALSQNPITL AHAIAKRFPV ALIDEFQDTD PLQFTIFNQV YQQPLASQLD LTADARVNSP
DDDSKSNDDN GNDNIGNDAN KGRLSLLMIG DPKQAIYAFR GADIYTYIAA RQQTQAHYNL
DTNYRSSTQL VNGVNQLFSQ HQDPFISQAI PYDIVKTPSS AANKHLSEAT TNPTALRIRL
LAEDDVNGLN KTTARQRLAA DAASEIKRLL TEAQQGLCKV NNSIEQEAKP LIAKDIAILV
RDRNEAAVMK AELSARKIGA VFLSRDSVFN TIEAREMAIL LYALATPKDE RAIRAALATE
LVGFNAQRIH QFNQDEEQRQ QVLDQFTHWH QLWQQRGVMP ALLNFASETK LIHRYLSQSV
TADINNDSTY SSNNDNNSDN SFNDADDDNA ADLKASGERR LTDFRHLAEL LQQKATELDG
SSALINWYEQ QLIGNNGGDE QQLRLESEQN LVQIVTIHKS KGLEYPVCFV PFVSLARGNK
KRPAPMMYHK NEQLIWDIDA TDEGWEQLKQ ETLAEDLRLL YVALTRPVYV CYLYIANQSR
QLKAGISSQL HETGIGYLLG ITDKKTDFAL IQAKVNAIAT LPAMSVECLG NDIDDSVLAD
IHDNNDPLVA KKVTRVQSLA WRVGSYSGLV KHLPHERVAP GADDEDFTDE LIQLQLQDEL
TSEPELDRFT FERGANAGSF MHLVLELFDF TQANTELTPA LTKAMKQYGF DEALWQQPLM
TWYQQILVAP LFIEPSSEDT SLTLSQLGMK QKMVEMEFYL PISTLQASQL NHILQQHGYV
AGLDFDTLKG MLKGFIDLTF EHKGQFYIAD YKSNHLGDNY SDYTHSAMAK AIDAHRYNLQ
YILYTLALHR YLSLRLPNYN YQQHIGGCYY LFLRGMHPEH PGAGVFYDKP PQALIEQLDR
LFTGNTDNRA PETSSC
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