| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2516 |
|---|
| Symbol | |
|---|
| ID | 4279425 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 3012019 |
|---|
| End bp | 3012969 |
|---|
| Gene Length | 951 bp |
|---|
| Protein Length | 316 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 638135311 |
|---|
| Product | permease |
|---|
| Protein accession | YP_751197 |
|---|
| Protein GI | 114563684 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0701] Predicted permeases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.114382 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTGGAAAT TTAAAATGAT AAATATTACT CAACAAATGC TTATAGAAAC CTTAAACATG
TTTGCCTTCC TTGCTGTAGA GCTAACGGTC TTGTTTTTAG TGATCAGTTA CTTTGTCGGC
ATACTTCAGG AATACATCCC ACCATCAAAA ATACGAACCA TTTTGAGTGG TAAAAATGGC
AAAGGATATA TCGTGGCGGG ATTATTAGGG GCAATTACCC CGTTCTGTTC GTGCTCCACT
ATTCCTTTCT TAAAAGGGCT TTTACGAGCA AACGCAGGAT TCGGGCCGAT GATGGTTTTC
TTGTTTGCAA GTCCTCTGCT CAATCCCATT ATTATTGGAT TATTTGCCGT GACCTTCGGT
CTAAAAGTAA CAGCCTTCTA TTTTGCTATC GCAATGGGAG TATCAGTAAT TGCAGGTTTT
ACCCTTGAAA AACTGGGCTT TGATAAGTAT GTAAAACCTG AAGCCAATTT TGCACCAGAT
GTGACAAATG CACCTGAAAA AACAACTTGC GGGTCTTCCT GTGGCGGCAA AACCAAACAG
GTCAGTAAAT GGCGAAAAAT TTGGAACAGC ACATGGAGTG ACTTTAAGAA AGTTCTTCCT
TATTTAATCG GTGGTATCGC TCTTGGTTCA ATGATTTACG GCTTTATGCC AACAGAGTTT
GTGGTAAGTG TTGCAAGTGA AAACAACCCT TTTGCTATTC CTATCGCTGC TGTCATTGGT
ATTCCATTGT ACATTCGTGC TGAGGCTATT ATTCCATTAA GCGCCGCATT GGCAGCAAAA
GGGATGAGTC TTGGCGCAGT CATGGCGTTA ATTATTGGTA GTGCTGGAGC AAGTTTAACT
GAAGTCATTT TGCTTAAATC TATCTTCAAA AACCAAATGA TTGTCGCTTT CTTATTCGTC
ATATTGAGTA TGGCAATGGG TGCTGGATTT CTATACCAAT CAATATTTTA G
|
|---|
| Protein sequence | MWKFKMINIT QQMLIETLNM FAFLAVELTV LFLVISYFVG ILQEYIPPSK IRTILSGKNG
KGYIVAGLLG AITPFCSCST IPFLKGLLRA NAGFGPMMVF LFASPLLNPI IIGLFAVTFG
LKVTAFYFAI AMGVSVIAGF TLEKLGFDKY VKPEANFAPD VTNAPEKTTC GSSCGGKTKQ
VSKWRKIWNS TWSDFKKVLP YLIGGIALGS MIYGFMPTEF VVSVASENNP FAIPIAAVIG
IPLYIRAEAI IPLSAALAAK GMSLGAVMAL IIGSAGASLT EVILLKSIFK NQMIVAFLFV
ILSMAMGAGF LYQSIF
|
|---|
| |