| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2514 |
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| Symbol | |
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| ID | 4279423 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 3010993 |
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| End bp | 3011532 |
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| Gene Length | 540 bp |
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| Protein Length | 179 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638135309 |
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| Product | RNA polymerase sigma factor SigZ |
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| Protein accession | YP_751195 |
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| Protein GI | 114563682 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02959] RNA polymerase sigma factor, SigZ family |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.75636 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGATATCTG AATGGCAACA TCACAAAGCG CAACTGCGCA GTTACGTTAG TAATCGCATT
GATGATGCTG ATGCAGTAGA TGACATCTTG CAAGATGTTT ACCTCAAAGC CAGTGGTAAT
CTGCATCAGT TAAAATCCAA AGGTAGCCTC AAAGGTTGGC TTTATCGTAT TGCTCACAAT
ACCATCATGG ATTTCTATCG GCAGCGGCAG CAATTTGAAG CATTGCCTGA CGATCTCGTT
GCAGAAGAGC AAGAGTCAGG TAAAGAGGCG CGTGAAGAAT TAGCAGAATG TTTACGACCA
TTGATTGACG AACTGCCTGA AAAATACGGC ACACCACTGC GTTTAGCGGA ACTAGAAGGT
GTATCGCAAC AAGCTATTGC CTATCAGTTA GGCTTGTCAC TCTCTGGGGC AAAAAGTCGA
ATTCAACGAG GCCGAGTTAA ATTTCGCCAG CAAATGATGG CTTGCTGTGA TTTTGAAATA
GGTCAAGAAG GTATAACCAG CTATGTCCCG AAAGATCCAC TCCAGCGAGC TAAATGTTAA
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| Protein sequence | MISEWQHHKA QLRSYVSNRI DDADAVDDIL QDVYLKASGN LHQLKSKGSL KGWLYRIAHN
TIMDFYRQRQ QFEALPDDLV AEEQESGKEA REELAECLRP LIDELPEKYG TPLRLAELEG
VSQQAIAYQL GLSLSGAKSR IQRGRVKFRQ QMMACCDFEI GQEGITSYVP KDPLQRAKC
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