| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2504 |
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| Symbol | |
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| ID | 4279414 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 2996780 |
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| End bp | 3000178 |
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| Gene Length | 3399 bp |
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| Protein Length | 1132 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638135300 |
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| Product | multi-sensor hybrid histidine kinase |
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| Protein accession | YP_751186 |
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| Protein GI | 114563673 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase
[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
[COG3300] MHYT domain (predicted integral membrane sensor domain) |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTATTTA ATTCCAAGCC GATAGCTTCC TTATACTTAT CTAAAAGTGA CATTCATCTA
ATTATTATGC TTGATACAAT CCGCACACTC TTTACTGTTA CAGATGAAAG CCTATTAATC
GTTGGTGATT TTCAACTTAT AGTTGTTTGC ATATCCATAG CTATCGCAAT ATTTGCCTCG
TTTATGGCAT TACAAGTCGC ATCGCAAGCA GCATTAACAC TCAATAAATT TAAACGACAC
TTACTCACCA GCTGTGGCAG CATCGCGCTT GGTGGCGGTG TGTGGTCAAT GCATTTTATT
GGCATGTTAG CATTCAGCTT ATGTACTCCG GTGAGCTATG ATTTCGGCTT AACCGCGTTA
TCTTTTATTC CCAGCATTGC AGCATCCTGG GTAGCCTTAA ATGTCATATC CACAACCAAA
CCAAAGCTAA GCCAATTTGT GGTGGGTGGT ATATTGACTG GCGCAGGTAT TGGCACCATG
CATTATGTCG GCATGGCCGC CATGGAAATG GCTCCCCTAC TTCGTTACAA CTTATTCTAT
TTTGGTTTAT CAATAATCAT TGCCATTATT TTGGCCATTC TCGCGCTGTG GATACGTTTT
AGCTTGAACC ATCTAGGTCG TTTTGCATTA AGTGATTTAC ATAAAAATGC GATTGCAGCG
ATGGTGATGG GCTGCGCAAT TTCCGGTATG CATTACATCG GTATGGCTGC GGCTCGTTTT
GTCCGCCCAC CCGGATTTGA ATTTTCTGCA CAAACCAAAA TGATGTCACT GTATTTAGGC
ATTGCAGTTG CCACGATTAC TGTGGTGATT ATTTTATTGG TATTAGCCGT CAACATGTTG
ATGAAATACC AAGCCTCGTT ACACCTAGCC AAATTAACTG AAGCACGTTA TCGCGCGACC
ATTAGTACCG CCGTTGACGG TATCATTACC TTTAACGCTA AAGGGCGTAT TGAAAGCGGC
AACCAAGCGG TAGAATTACT TCTTGGCTGG CGACTTGAAG ATGTATGTCA TCAAAATATT
CGTGACTTTA TCCCGAGTCC ATTTATCGAT GAGTTTAACG CCCGTTTAGA CAGTTTTAGC
AACAACATAG GGCAACAAAA AAGTACTGGC CGCGATGTAG AAGCGCTACA TGTTAACGGT
ACGACCATTC CAGTTAGAGT GTCAATTGGC CATGCGTGTA TTGAAGGTAA AAGCCTGTTT
GTGATGTACA TAAGTGACTT ACGTCACCGT ATTGAAATGC AGCGCGCGTT GATTAAAAGC
GAAGCTCAGT TTCGCTCACT TATCACCAAT ATTCCCGGTA TCGCTTATCG CTGTTTAAAT
GTTGAAAACT GGCCGATGGT ATTCATTAGC GATGCGGTTG AAAATATTAC CGGTTATCCA
GCAAGTGACT ATATAGGCGC AACACCAAAA CGTCATTTTT ACCAACACGT ACATCCAGAT
GACCTTGAGC AAATAGGCAA TCAAGTCGTC ACAGACCAAG TGTTTAAGCT GGAATACCGT
ATCTATAATG CCAACGGTGA TATTCGCTGG CTGCTCGGTT ATGGTGCTCA TGTTGACGGG
ATAGATGTAC AAGATAAATG GCTCGACGGC TTTATTATGG ACATCACCGA TCGCAAAGAA
ATGGAGCAAT CTTTATTAAT TGCCAAAGAC AAAGCGGAAC AAGCAGCATC GGCTCGCTCG
GCATTCCTAG CGAACATGAG CCACGAAATT CGCACCCCAA TGAACGCCAT CATTGGTTTT
AGCGACATTT TACTCGACGA TTCGCTACCC GCTGAGCAGC AAAAACATTT ACGTACTATT
AATCAGTCTG CTAAGTCTTT ATTGCACCTA CTAAACGATG TTCTCGATAG TGCCAAGTTA
GACAAAGGCA AGTTCGATCT CGAATTGCGC GATTTCTCTG TTATCGAAGA AATTGATTCG
GTGGTATCGA CACTATGGTT ACAAGCTAGT TCTAAAGGTT TGTTCTTAAA TGTGAATGTA
TCAGCAGATG TGGCAATATC TTATCATGGT GCTCCAGACC GAATTCGTCA GGTATTGACC
AATTTAATTG GTAATGCGAT TAAATTTACC GCCGAAGGTG GCGTCAGTAT CGATGTTAGC
GTTAAACCAA GCGGTTGCAT TGAATTTGCG ATTAACGATA CCGGTATTGG CATGACGCCA
GAACAACTAG CCTTAGTGTT TGATGCCTTT GCTCAAGCAG ATGCCAGCAT GAACCGACGC
TTTGGTGGCA CTGGTCTGGG GACAACCATC AGCAAACAGT TGGTTGAATT AATGGGCGGT
AAAATTACCG CTAAAAGCAC ATTTGGCCAA GGCAGTTGTT TTGGCTTTAC CTTGCCATTA
ACCGCACCCA AACACATCAA CAGCACGTTG ACTCCGTTAA CAACCCGTCA CATTAAACCA
CTGGCTATTT TGATAGTTGA TGACATCCAG CAAAATATTG ATTTGCTCAC CATTATGATG
AAGCGCCAAG GTCACAGCAT CATTACAGCC CGCGACGGTA AACAAGCCCT ACTGCGAATG
CGCAACGACA AAATAGATCT TGTATTGATG GACGTGCAAA TGCCTATCAT GGACGGATTA
ACCGCCTCGC GTACTCGTCG TGAACAAGAG CAAAACGAAC AGTTACCGCA TATGCCAATT
ATTGCATTAA CGGCCAGCGT ACTGCCTGAA GACAAAAAAG CAGCATTAGA TGCCGGTATG
GATGGTTTTG CCAATAAACC TATCGATATG ATGCTGCTTA ATCATGAAAT TGCCCAAGTG
TTGAAACTTG AACAAAGCAA TATGGCCGTC GATAACACCG CTGTTGATAT CGACAACAGG
CAAGTGGTTA ATGAGAAAAA AGGCATCTCG ATGTGGGGAA GTAAAGACAC TCTCGTGAAA
GAAATTAGCC TATTTATGAC TAAACAACAC GATAGCAACC AACAGCTTAA ACAATTAATA
CAAACTGCCG ACTGGCCAGC TATTAATCAG CATTTACATG GACTCAAAGG GTTGTCTGGC
AATTTATCGC TAACGCAACT AACACGTTTA TTTAGCGATG CCGAGCGCTT AGCCATGACA
AAATCCACCA CTGAATTATT GGCTTTGCTG CCCACTATTG AGCAGGCTTT TGACCATGTG
ACAACCTATC TTAGCACTCA AGATATCAGT CAACACCCAG ATCAAACCGC AGAAAAAGAT
AGTATGAGCG TTGATGAGTT CATCCAAATC ATTAACCTTA TTCGCTTAGC TGCAAAAGAA
AACCAATACA ATGAGCACGA TGTAGACACA CTAATTGCAG CAACTCCGTC GGCATACCGA
CAGCAATGTA TCAACATACA ACATGCTCTA GACGACTTTG AATTTGAACA AGCAATAACA
CAACTCAATG CACTTGAGTC CAATGTTACT GCACAGTAA
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| Protein sequence | MLFNSKPIAS LYLSKSDIHL IIMLDTIRTL FTVTDESLLI VGDFQLIVVC ISIAIAIFAS
FMALQVASQA ALTLNKFKRH LLTSCGSIAL GGGVWSMHFI GMLAFSLCTP VSYDFGLTAL
SFIPSIAASW VALNVISTTK PKLSQFVVGG ILTGAGIGTM HYVGMAAMEM APLLRYNLFY
FGLSIIIAII LAILALWIRF SLNHLGRFAL SDLHKNAIAA MVMGCAISGM HYIGMAAARF
VRPPGFEFSA QTKMMSLYLG IAVATITVVI ILLVLAVNML MKYQASLHLA KLTEARYRAT
ISTAVDGIIT FNAKGRIESG NQAVELLLGW RLEDVCHQNI RDFIPSPFID EFNARLDSFS
NNIGQQKSTG RDVEALHVNG TTIPVRVSIG HACIEGKSLF VMYISDLRHR IEMQRALIKS
EAQFRSLITN IPGIAYRCLN VENWPMVFIS DAVENITGYP ASDYIGATPK RHFYQHVHPD
DLEQIGNQVV TDQVFKLEYR IYNANGDIRW LLGYGAHVDG IDVQDKWLDG FIMDITDRKE
MEQSLLIAKD KAEQAASARS AFLANMSHEI RTPMNAIIGF SDILLDDSLP AEQQKHLRTI
NQSAKSLLHL LNDVLDSAKL DKGKFDLELR DFSVIEEIDS VVSTLWLQAS SKGLFLNVNV
SADVAISYHG APDRIRQVLT NLIGNAIKFT AEGGVSIDVS VKPSGCIEFA INDTGIGMTP
EQLALVFDAF AQADASMNRR FGGTGLGTTI SKQLVELMGG KITAKSTFGQ GSCFGFTLPL
TAPKHINSTL TPLTTRHIKP LAILIVDDIQ QNIDLLTIMM KRQGHSIITA RDGKQALLRM
RNDKIDLVLM DVQMPIMDGL TASRTRREQE QNEQLPHMPI IALTASVLPE DKKAALDAGM
DGFANKPIDM MLLNHEIAQV LKLEQSNMAV DNTAVDIDNR QVVNEKKGIS MWGSKDTLVK
EISLFMTKQH DSNQQLKQLI QTADWPAINQ HLHGLKGLSG NLSLTQLTRL FSDAERLAMT
KSTTELLALL PTIEQAFDHV TTYLSTQDIS QHPDQTAEKD SMSVDEFIQI INLIRLAAKE
NQYNEHDVDT LIAATPSAYR QQCINIQHAL DDFEFEQAIT QLNALESNVT AQ
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