Gene Sfri_2433 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_2433 
Symbol 
ID4279344 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp2895846 
End bp2897522 
Gene Length1677 bp 
Protein Length558 aa 
Translation table11 
GC content41% 
IMG OID638135229 
Productsignal transduction histidine kinase, LytS 
Protein accessionYP_751116 
Protein GI114563603 
COG category[T] Signal transduction mechanisms 
COG ID[COG3275] Putative regulator of cell autolysis 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.618184 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCGTTAA TATTACTGCT AACACAACAA ATGTGTGTTT ACTTAGTTAT CGTTTACTTA 
GTCAGTAAAA CGCCATTATT TAAACTATTT GCAGAGACTT CAAAACGATT ACCTCATAAG
ATTTTTATTT ACTTAGTGTT CTCCAGCTTT TGCATAATGG CAACTTACTT TGGTGAACAA
ACCTCAGGAG CCATTGCTAA TACTCGTGCT ATGGGCGCTG TATTAGGCGG ATTACTAGGT
GGACCTGTAA CTGGTTTACT GGTTGGGTTA ACGGGTGGAT TACACCGTTA TTCTATGGGT
GGATTCACCG ATATTGCTTG CGCCATATCC ACCAGCTTAG AAGGCTTATC CGCAGGTATG
ATCAGTTATT ACTTCAAAAA AGCCGGTAAA TCAGAAATGG TTTATCAGCC AATTGTGGTA
TTGGGGGTCA CGTTTATGGC TGAAATAATG CAGATGTCGA TAATTGTATT AGTCGCAAAA
CCCTTTGATC AGGCTTGGGA ATTGGTCAAA CTGATCGCCC CGCCCATGTT ACTGATTAAT
TCACTCGGCG CTGCGATGTT TATGAGTATT GTTCGCGACC AAAAAGCCAT GTTTGATAAA
CTTTCTTCCA GTTTTTCGAC TAAAGCACTT AAAATAGCTG AGCGCAGTGT CGGCTTACTG
TCTAAAGGAT TTGATTTGGA GTCGAGTAAA AAAGTCGCCC AAATCATAAT AGAAGAAACT
CAAGTTGGCG CAGTCGCCAT TACCGACACC ACTAAATTAC TGGCATTTAT TGGCCTTGGG
GCAGATCACC ATATTCCTAA TACGCCTATT TCCTCAAAAA TCACCCTCGA TGCCATCGCA
CAAAATAGTG TGATGTTTGC TGATGGGGTC GATACCACTT ATTCCTGCTC TATATCGCCC
AATTGCAGTT TAGGCTCAAG CCTAGTCATT CCGCTGCGCA GCAACGACGA AGTCATTGGC
ACAATTAAAT TATACGAACC TAAAAACAAA TTGTTTTTAA ACATAAATCG CACATTAGGC
GAAGGTATTG CGAGGTTAAT GTCTAACCAA ATTCTTTATG GCCGCTTTGA GCAACAGCAA
AGCTTATTGA TGCAAGCAGA GATAAAGTTG TTACAGGCTC AGGTTAATCC GCACTTTTTA
TTTAATGCAC TCAATACCAT CAGTGCAATT ATTAAGCGTG ACCCACAAAT GTCTAAGCAA
TTATTACAGC AGTTATCGCA ATTTTTGCGC ATCAACTTGA CCAGAACTAC AGGGCTGGTG
ACAATGGCTG ATGAACTTGA GCACATCGAC GCTTATCTCG CTATCGAACG CGCTCGGTTT
ATCGACAAAC TGCAAGTCAA CATAGATATT GCTATGATTT ATCATCACCA AAAAATGCCC
GCATTTACCT TACAGCCGTT AATTGAAAAT GCAGTAAAAC ACGGTACATC GCGGATGCTT
GATGCCGGTG TGATTGATGT TAAAGCCACA TTGGATGGCG ATGATTTATT ACTCAACGTG
ACCGATAATG CAGGTTTATA TCAACCCTCT AACAACACTG ATGGTTTAGG AATGAACTTA
GTCCATAAAC GAATTCAGAA TTTATTTGGC AGCCAATACG GCATTGAAGT TGAGTGTGAA
CCAGATGTAT TCACTCGTGT TAGTGTGCGT TTACCGTTAA AGGAAATGGA CCAATGA
 
Protein sequence
MSLILLLTQQ MCVYLVIVYL VSKTPLFKLF AETSKRLPHK IFIYLVFSSF CIMATYFGEQ 
TSGAIANTRA MGAVLGGLLG GPVTGLLVGL TGGLHRYSMG GFTDIACAIS TSLEGLSAGM
ISYYFKKAGK SEMVYQPIVV LGVTFMAEIM QMSIIVLVAK PFDQAWELVK LIAPPMLLIN
SLGAAMFMSI VRDQKAMFDK LSSSFSTKAL KIAERSVGLL SKGFDLESSK KVAQIIIEET
QVGAVAITDT TKLLAFIGLG ADHHIPNTPI SSKITLDAIA QNSVMFADGV DTTYSCSISP
NCSLGSSLVI PLRSNDEVIG TIKLYEPKNK LFLNINRTLG EGIARLMSNQ ILYGRFEQQQ
SLLMQAEIKL LQAQVNPHFL FNALNTISAI IKRDPQMSKQ LLQQLSQFLR INLTRTTGLV
TMADELEHID AYLAIERARF IDKLQVNIDI AMIYHHQKMP AFTLQPLIEN AVKHGTSRML
DAGVIDVKAT LDGDDLLLNV TDNAGLYQPS NNTDGLGMNL VHKRIQNLFG SQYGIEVECE
PDVFTRVSVR LPLKEMDQ