Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_2433 |
Symbol | |
ID | 4279344 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 2895846 |
End bp | 2897522 |
Gene Length | 1677 bp |
Protein Length | 558 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 638135229 |
Product | signal transduction histidine kinase, LytS |
Protein accession | YP_751116 |
Protein GI | 114563603 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3275] Putative regulator of cell autolysis |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.618184 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCGTTAA TATTACTGCT AACACAACAA ATGTGTGTTT ACTTAGTTAT CGTTTACTTA GTCAGTAAAA CGCCATTATT TAAACTATTT GCAGAGACTT CAAAACGATT ACCTCATAAG ATTTTTATTT ACTTAGTGTT CTCCAGCTTT TGCATAATGG CAACTTACTT TGGTGAACAA ACCTCAGGAG CCATTGCTAA TACTCGTGCT ATGGGCGCTG TATTAGGCGG ATTACTAGGT GGACCTGTAA CTGGTTTACT GGTTGGGTTA ACGGGTGGAT TACACCGTTA TTCTATGGGT GGATTCACCG ATATTGCTTG CGCCATATCC ACCAGCTTAG AAGGCTTATC CGCAGGTATG ATCAGTTATT ACTTCAAAAA AGCCGGTAAA TCAGAAATGG TTTATCAGCC AATTGTGGTA TTGGGGGTCA CGTTTATGGC TGAAATAATG CAGATGTCGA TAATTGTATT AGTCGCAAAA CCCTTTGATC AGGCTTGGGA ATTGGTCAAA CTGATCGCCC CGCCCATGTT ACTGATTAAT TCACTCGGCG CTGCGATGTT TATGAGTATT GTTCGCGACC AAAAAGCCAT GTTTGATAAA CTTTCTTCCA GTTTTTCGAC TAAAGCACTT AAAATAGCTG AGCGCAGTGT CGGCTTACTG TCTAAAGGAT TTGATTTGGA GTCGAGTAAA AAAGTCGCCC AAATCATAAT AGAAGAAACT CAAGTTGGCG CAGTCGCCAT TACCGACACC ACTAAATTAC TGGCATTTAT TGGCCTTGGG GCAGATCACC ATATTCCTAA TACGCCTATT TCCTCAAAAA TCACCCTCGA TGCCATCGCA CAAAATAGTG TGATGTTTGC TGATGGGGTC GATACCACTT ATTCCTGCTC TATATCGCCC AATTGCAGTT TAGGCTCAAG CCTAGTCATT CCGCTGCGCA GCAACGACGA AGTCATTGGC ACAATTAAAT TATACGAACC TAAAAACAAA TTGTTTTTAA ACATAAATCG CACATTAGGC GAAGGTATTG CGAGGTTAAT GTCTAACCAA ATTCTTTATG GCCGCTTTGA GCAACAGCAA AGCTTATTGA TGCAAGCAGA GATAAAGTTG TTACAGGCTC AGGTTAATCC GCACTTTTTA TTTAATGCAC TCAATACCAT CAGTGCAATT ATTAAGCGTG ACCCACAAAT GTCTAAGCAA TTATTACAGC AGTTATCGCA ATTTTTGCGC ATCAACTTGA CCAGAACTAC AGGGCTGGTG ACAATGGCTG ATGAACTTGA GCACATCGAC GCTTATCTCG CTATCGAACG CGCTCGGTTT ATCGACAAAC TGCAAGTCAA CATAGATATT GCTATGATTT ATCATCACCA AAAAATGCCC GCATTTACCT TACAGCCGTT AATTGAAAAT GCAGTAAAAC ACGGTACATC GCGGATGCTT GATGCCGGTG TGATTGATGT TAAAGCCACA TTGGATGGCG ATGATTTATT ACTCAACGTG ACCGATAATG CAGGTTTATA TCAACCCTCT AACAACACTG ATGGTTTAGG AATGAACTTA GTCCATAAAC GAATTCAGAA TTTATTTGGC AGCCAATACG GCATTGAAGT TGAGTGTGAA CCAGATGTAT TCACTCGTGT TAGTGTGCGT TTACCGTTAA AGGAAATGGA CCAATGA
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Protein sequence | MSLILLLTQQ MCVYLVIVYL VSKTPLFKLF AETSKRLPHK IFIYLVFSSF CIMATYFGEQ TSGAIANTRA MGAVLGGLLG GPVTGLLVGL TGGLHRYSMG GFTDIACAIS TSLEGLSAGM ISYYFKKAGK SEMVYQPIVV LGVTFMAEIM QMSIIVLVAK PFDQAWELVK LIAPPMLLIN SLGAAMFMSI VRDQKAMFDK LSSSFSTKAL KIAERSVGLL SKGFDLESSK KVAQIIIEET QVGAVAITDT TKLLAFIGLG ADHHIPNTPI SSKITLDAIA QNSVMFADGV DTTYSCSISP NCSLGSSLVI PLRSNDEVIG TIKLYEPKNK LFLNINRTLG EGIARLMSNQ ILYGRFEQQQ SLLMQAEIKL LQAQVNPHFL FNALNTISAI IKRDPQMSKQ LLQQLSQFLR INLTRTTGLV TMADELEHID AYLAIERARF IDKLQVNIDI AMIYHHQKMP AFTLQPLIEN AVKHGTSRML DAGVIDVKAT LDGDDLLLNV TDNAGLYQPS NNTDGLGMNL VHKRIQNLFG SQYGIEVECE PDVFTRVSVR LPLKEMDQ
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