Gene Sfri_2421 details

Gene Information

• Locus tag: Sfri_2421
• Symbol: hscB
• ID: 4279332
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella frigidimarina NCIMB 400
• Kingdom: Bacteria
• Replicon accession: NC_008345
• Strand: -
• Start bp: 2887219
• End bp: 2887743
• Gene Length: 525 bp
• Protein Length: 174 aa
• Translation table: 11
• GC content: 41%
• IMG OID: 638135217
• Product: co-chaperone HscB
• Protein accession: YP_751104
• Protein GI: 114563591
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG1076] DnaJ-domain-containing proteins 1
• TIGRFAM ID: [TIGR00714] Fe-S protein assembly co-chaperone HscB

Plasmid Coverage information

• Num covering plasmid clones: 23
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATTATT TCGATCTGTT TAATGTAGTA CCTGCCTTTG ATATCGACAC CGCCTTACTT 
GCAGAGCGCT ACCGCGAACT GCAACGGGCG GTTCATCCCG ATAAATTCGC TAATGATACC 
GAGCAACAAA AGCTGCTATC AGTTCAGCGA ACTGCACAAG TTAATGATGG TTATCAAACA 
TTAAAAAATC CCCTACGCCG TGCTGAACAC ATGTTGAGCT TGCGTGGAAT TGAATTAAGT 
CACGAAACCA CAACATTGAA AGATGGTGCA TTTTTGATGC AGCAAATGGA GTGGCGTGAA 
GCACTTGAAG ATATCCAACA CAATAGTGAT CCACAGTCAT CAATTGATGA ACTGTATGAG 
TCGTTTGGTG AGTTTGAGTC AACATTACTG ACTAAACTGG CGACGCTATT GATTAGTGAT 
GAAAGTGCAG ATGCTTTATT AGCGGCAGAT CAAATTCGTA AGTTAAAGTT TATGGCAAAA 
TTACATGATG AGTTAGCCCG TATTGAAGAT GGCTTGCTCG ATTAA 

 

Protein sequence

MNYFDLFNVV PAFDIDTALL AERYRELQRA VHPDKFANDT EQQKLLSVQR TAQVNDGYQT 
LKNPLRRAEH MLSLRGIELS HETTTLKDGA FLMQQMEWRE ALEDIQHNSD PQSSIDELYE 
SFGEFESTLL TKLATLLISD ESADALLAAD QIRKLKFMAK LHDELARIED GLLD