Gene Sfri_2420 details

Gene Information

• Locus tag: Sfri_2420
• Symbol: hscA
• ID: 4279331
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella frigidimarina NCIMB 400
• Kingdom: Bacteria
• Replicon accession: NC_008345
• Strand: -
• Start bp: 2885287
• End bp: 2887146
• Gene Length: 1860 bp
• Protein Length: 619 aa
• Translation table: 11
• GC content: 44%
• IMG OID: 638135216
• Product: chaperone protein HscA
• Protein accession: YP_751103
• Protein GI: 114563590
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG0443] Molecular chaperone
• TIGRFAM ID: [TIGR01991] Fe-S protein assembly chaperone HscA

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 0.643944
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCACTGT TGCAAATTGC AGAACCTGGC CAAAGCGCCG CACCGCACCA GCATCGTCTT 
GCGGTTGGGA TTGATCTTGG TACCACCAAC TCACTTGTTG CTGCGGTAAG AAGTGCTCAA 
GCATTAACTT TACCTGATGA ACAAGGTCGT CATTCGTTGC CGTCTGTAGT GCATTATGGT 
GAAACCAATG TGTTAGTGGG CTATGAAGCT CAAGACAAAT CTGCTTTAGA TCCACAAAAT 
ACCATCGTTT CAGTCAAGCG TTTTATGGGA CGTAGCCTCA CTGATATCCA GTCTGGTGTT 
CATCGTTTAC CCTATGAATT ACACGCAAGT GAAAACGGCT TACCGGTGTT CACTACGCCT 
ATGGGACAAG TGAATCCTAT TCAAGTGTCA GCCGAAATTT TAAAACCTTT AATTGCGCGA 
GCTGAAACCA CACTAGGTGG CGAATTAGCG GGCGTGGTGA TTACTGTGCC TGCGTATTTT 
GATGATGCAC AACGTCAAGG TACCAAAGAT GCTGCTGAGT TATTGGGTGT TAAAGTATTA 
CGTTTATTGA ATGAACCCAC TGCAGCAGCC ATTGCTTATG GATTAGATTC AAAGCAAGAA 
GGTGTCATTG CCATTTACGA CTTAGGCGGC GGTACTTTCG ATATCTCGGT TTTACGATTA 
AACCGTGGCG TATTTGAAGT GTTAGCCACT GGTGGTGATT CTGCATTGGG TGGTGATGAT 
TTTGATCACT TACTCGTGAG CCATTTACAA CAGGCATGGC AGATAACAGA ACCAGGCAGT 
CAATTAGCAC GTCAATTACT CATTGAAGCT CGCCGAGTTA AAGAAGCGTT GACTGACAAT 
GACAGCGTTG AAGCTTCTGT CGTCATGGCT GATAAAACAT TAACTTGCAC TGTTGATAAA 
AGCTTATTTA ACGAGTTAAT TGGCGCATTG GTGAAAAAAA CCATCGGCTG TTGTCGTCGT 
ACTTTACGTG ATGCCGGCGT GAGTGTGGAT GACGTTATTG AAACTGTGAT GGTCGGTGGT 
TCAACCCGCG TACCATTGGT GCGTGAACAA GTTGAAACTT TTTTCAAAAA GACACCATTG 
ACATCAATCG ATCCTGATCG TGTTGTCGCC ATTGGTGCAG CGATTCAAGC TGACATTCTT 
GTTGGTAATA AACCTGAATC CGATTTGTTA CTGTTAGATG TGATTCCATT ATCGCTTGGC 
GTTGAAACCA TGGGTGGCTT GGTTGAAAAA GTGGTTACGC GTAATACCAC TATTCCTGTT 
GCACGCGCAC AAGAGTTTAC CACGTTTAAA GATGGTCAAA CGGCCATGGC ATTCCATGTG 
GTGCAGGGCG AACGAGAGCT TGTTGAAGAT TGTCGCTCGT TGGCTCGTTT TACCTTACAC 
GGTATTCCAC CTCTAGCGGC AGGTGCAGCG CATATTCGAG TGACATTCCA AGTGGATGCT 
GATGGTTTGC TTAGTGTTAC TGCGATGGAA AAATCCACTG GGGTTAATAC ATCAATTCAG 
GTTAAACCGT CATTTGGTTT ATCGGATACT GAAATTGCCA CCATGTTAAA AGATTCGATG 
AAGTATGCGA AAGATGACAT TACTCGTCGT ATGCTGGCTG AACAAAAAGT TGAAGCGGCG 
CGGGTGATAG AATCACTTAA TGCAGCTTTG GCTAAAGATG CTGCGCTTCT GGATGAGCAA 
GAACGCGAAG AGTTAGTTGT GGCTATTGCC CAACTTGATG CCGTAGCACA ACAAGATAAT 
ATTGATGCCA TTGAAAAAGC AATTGCAAAT CTTGATGATA AAACCCAAGA TTTTGCATCA 
AGACGTATGG ATAATTCTAT TAGAGCGGCG CTAAAAGGGC AGTCGGTCGA CAACATATAG 

 

Protein sequence

MALLQIAEPG QSAAPHQHRL AVGIDLGTTN SLVAAVRSAQ ALTLPDEQGR HSLPSVVHYG 
ETNVLVGYEA QDKSALDPQN TIVSVKRFMG RSLTDIQSGV HRLPYELHAS ENGLPVFTTP 
MGQVNPIQVS AEILKPLIAR AETTLGGELA GVVITVPAYF DDAQRQGTKD AAELLGVKVL 
RLLNEPTAAA IAYGLDSKQE GVIAIYDLGG GTFDISVLRL NRGVFEVLAT GGDSALGGDD 
FDHLLVSHLQ QAWQITEPGS QLARQLLIEA RRVKEALTDN DSVEASVVMA DKTLTCTVDK 
SLFNELIGAL VKKTIGCCRR TLRDAGVSVD DVIETVMVGG STRVPLVREQ VETFFKKTPL 
TSIDPDRVVA IGAAIQADIL VGNKPESDLL LLDVIPLSLG VETMGGLVEK VVTRNTTIPV 
ARAQEFTTFK DGQTAMAFHV VQGERELVED CRSLARFTLH GIPPLAAGAA HIRVTFQVDA 
DGLLSVTAME KSTGVNTSIQ VKPSFGLSDT EIATMLKDSM KYAKDDITRR MLAEQKVEAA 
RVIESLNAAL AKDAALLDEQ EREELVVAIA QLDAVAQQDN IDAIEKAIAN LDDKTQDFAS 
RRMDNSIRAA LKGQSVDNI