| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2414 |
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| Symbol | |
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| ID | 4279325 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 2878179 |
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| End bp | 2879123 |
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| Gene Length | 945 bp |
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| Protein Length | 314 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638135210 |
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| Product | dihydrouridine synthase, DuS |
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| Protein accession | YP_751097 |
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| Protein GI | 114563584 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.127595 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCGCGTTA TTTTAGCTCC AATGGAAGGT GTGGTTGATG ACCATATGCG TGAAATATTA
TCTGCCATCA ATCCATTTGA CCTGGTTGTG ACTGAATTTG TCAGGGTCGT CAATCAACTC
ATACCAGATA AAGTGTTCTA TAAACTGTGC CCTGAGCTAC TTCATCAAGG GCTAACCGCA
TCAGGAACTC CTGTACGTGT TCAGTTGTTA GGACAAGAAC CAGAGTGGAT GGCACAAAAT
GCCATAAGAG CCATAGAGCT AGGCTCAAAT GGTGTTGATG CAAATTTTGG TTGCCCAGCT
AAAACTGTCA ATAAAAGCAA AGGCGGCGCA GTATTACTCC AATATCCTGA GAATATTTAC
AGTATCGTCA AAGCCATGCG CGACGCAGTA CCCTCTGAGC ATCCTGTTAC AGCTAAAATC
CGTTTAGGCT ACGAAGATAA ATCGTTATTT ATGGAAAACG CCTTAGCCGT GTATGAGGCT
GGCGCAACAG AGCTCGCTAT TCATGCTCGC AGTAAAACCG ATGGTTATAA ACCTCCGGCA
TATTGGGAAT ACATTACTGA AGTGAGACAG CGCCTGCCAA TTCCTGTTAT CGCTAACGGA
GAAATTTGGA ATGCCGCTGA TGCTCAGAGA TGCATGGATG TCACTGGCTG TGACAGTATA
ATGATTGGTC GAGGAGCCAT ATCGTTGCCT AATCTAGGCG ATACCATCAA AACTGGTGCG
ACGCCATTTA GTTGGCAACA AACCTTAAGC TTACTTATGG CCTATACCGA CAAAGAACTT
AATGGTCGTA AATCTGACTA TTATCCTTCA CGGATTAAAC AATGGTTTAG TTACTTAAAC
CGTCAATACC CTGAAGCGGA TACTCTATTT AGAGAGCTAC GAGTGTTCAA AACAACTGAA
GAAATCGTTA AGGTTCTACA GCATGCTCAC AGGTCGCTTA TATAA
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| Protein sequence | MRVILAPMEG VVDDHMREIL SAINPFDLVV TEFVRVVNQL IPDKVFYKLC PELLHQGLTA
SGTPVRVQLL GQEPEWMAQN AIRAIELGSN GVDANFGCPA KTVNKSKGGA VLLQYPENIY
SIVKAMRDAV PSEHPVTAKI RLGYEDKSLF MENALAVYEA GATELAIHAR SKTDGYKPPA
YWEYITEVRQ RLPIPVIANG EIWNAADAQR CMDVTGCDSI MIGRGAISLP NLGDTIKTGA
TPFSWQQTLS LLMAYTDKEL NGRKSDYYPS RIKQWFSYLN RQYPEADTLF RELRVFKTTE
EIVKVLQHAH RSLI
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