| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2396 |
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| Symbol | |
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| ID | 4279307 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 2857648 |
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| End bp | 2858367 |
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| Gene Length | 720 bp |
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| Protein Length | 239 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638135192 |
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| Product | lipoprotein releasing system, ATP-binding protein |
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| Protein accession | YP_751079 |
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| Protein GI | 114563566 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
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| TIGRFAM ID | [TIGR02211] lipoprotein releasing system, ATP-binding protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.261186 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCCAGA CACAACAAGC GTTATTACAA GTTCAACACG TCAGTAAGCA TTATCATGAC
GGTGAAGTGA CCACTCAGGT ATTATCGGGT GTTGATTTAA CCGTGTATAA GGGTGAGCAG
CTAGCCATTG TAGGCAGTTC TGGATCGGGT AAAAGTACGC TTTTACATAT CATGGGTACC
TTAGACACGC CAACGTCTGG AACCGTGTTA TTAGACGGCG AAGATTTATA TCAATTGTCT
AGTGCGCGTC AGGCACAAAT ACGTAATCAG GATTTGGGCT TTATCTATCA ATTTCATCAT
TTATTGCCAG AGTTTACCGC GATTGAAAAC GTGGCGATGC CAGCATTTAT TCAAGGCAGA
GATAAAACGC AAGCCTTGGT AGACGCAAAA AATTTACTTG AACGTGTGGG GTTAGGTCAT
CGTTTGCAGC ATATTCCGGC GCAATTGTCG GGTGGTGAGC GTCAACGTGT GGCGATTGCC
AGAGCACTTA TCAACAAACC AAAGTTAGTA TTAGCCGATG AACCTACAGG TAATTTGGAT
GCCAGCAGTG GTGATAATGT TTATGCGATG ATCCGCGAGT TAGCGCAGCA ATTTGGTACG
GCGTTCGTGG TGGTTACTCA TGATCATAAA TTAGCAGCCA AGATGGATCG TCAATTGACA
ATGAAAGACG GCATTTTGCA AGTTGTTGCT GCAACATCTC CAACAGGGCT AGCCGAATGA
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| Protein sequence | MSQTQQALLQ VQHVSKHYHD GEVTTQVLSG VDLTVYKGEQ LAIVGSSGSG KSTLLHIMGT
LDTPTSGTVL LDGEDLYQLS SARQAQIRNQ DLGFIYQFHH LLPEFTAIEN VAMPAFIQGR
DKTQALVDAK NLLERVGLGH RLQHIPAQLS GGERQRVAIA RALINKPKLV LADEPTGNLD
ASSGDNVYAM IRELAQQFGT AFVVVTHDHK LAAKMDRQLT MKDGILQVVA ATSPTGLAE
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