| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2395 |
|---|
| Symbol | |
|---|
| ID | 4279306 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 2856410 |
|---|
| End bp | 2857651 |
|---|
| Gene Length | 1242 bp |
|---|
| Protein Length | 413 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 638135191 |
|---|
| Product | lipoprotein releasing system, transmembrane protein, LolC/E family protein |
|---|
| Protein accession | YP_751078 |
|---|
| Protein GI | 114563565 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
|---|
| TIGRFAM ID | [TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAAGT GGTTACCGTT AACAATTGGC TGGCGTTTTT TCCGTGCCAG ACAGTCTAAT
GGCTTTATCG GTTTTATCTC ATTTGCATCA ACTGCGGGTA TTGCCTTAGG TGTGGGTGTG
CTAATTGTGG TGTTATCTGC CATGAATGGT TTTGAAAAAG AATTACAAGA CCGGTTATTA
GGCGTGGTGT CTCACGGCGA ACTCGTTGGG GTTAACCAAC CCATTGCCGA TTGGCAGGAT
ATTGCCAAAA GTGCTTCAAA TATGCCGCAG ATTACTGGCG TTGCCCCTTT TGTGCGCTTG
CAAGGGTTAG TGCAAAAGCC AGGCGGGTTT CAAGGGTTAA TCGTCAACGG TATTGATATT
AAACATGAAT CTGACGTGTC CAGCATTGCT GATTATATGT CTGTCGATGC ATGGCAGTCA
TTAAGCAGTG ATGAAAATCA TATCGTGCTT GGCCGCAGTT TATTAACTAA GTTGGGCTTG
AAGGTGGGTG ACACCTTGGC GATGTATACG CCAGATGCTA ATAACAGTCA GTTAACGTCG
GCCAAAAGCC ATCGCTTTGT GGTGTCTGGC GTGTTCGAGT TGGGTGGCGA AATTGAATCG
ACTCAAGCTT ATGTGTCGCT TGATTATTTA GCCGATTTGC TCGAGCTGGG TTCTGCCGTT
TCTGGGGTAC GAATTCAAGT CAATAATGTG TTTAATGCAG CAAGTATCAC TCGTGATTTA
GGATTTGCCC AAGAGCAGTA TTTATACATT AATGATTGGA CTCGCACACA AGGGCATTTA
TACCAAGATA TTCAACTCGT TCGTTTAGTG ATGTATTTGG TGTTAGCGCT GGTTATTGCT
GTGGCGTGTT TTAATATTGT GTCGACACTT GTTATGGCAG TGCGCGATAA AGCCTCTGAA
ATTGCGATTC TGATGACAAT GGGGCTTCAT CGTGGTGCCA TTATGGCGAT ATTTATTCTG
CAAGGTGCTT TAAATGGACT GATGGGGTGC ACTATTGGTG GCATATTAGG GGTCACTCTA
GCATATAATT TAAGTGCTAT TGCCAGCAGT CTTGAGCAGA TATTAGGTAT TCAACTATTA
GCATCGGATA TTTATTTTAT TGATTTCCTT CCTTCTGAAT TACATTATCA AGATGTATTA
GTTGTATTGT TAATGGGCCT ATTCATGAGC CTTATTGCAA CCATTTACCC TGCATGGAAA
GCGACTAAAA TCGCGCCAGC CACTGCATTA GCGGGAAGGT AG
|
|---|
| Protein sequence | MSKWLPLTIG WRFFRARQSN GFIGFISFAS TAGIALGVGV LIVVLSAMNG FEKELQDRLL
GVVSHGELVG VNQPIADWQD IAKSASNMPQ ITGVAPFVRL QGLVQKPGGF QGLIVNGIDI
KHESDVSSIA DYMSVDAWQS LSSDENHIVL GRSLLTKLGL KVGDTLAMYT PDANNSQLTS
AKSHRFVVSG VFELGGEIES TQAYVSLDYL ADLLELGSAV SGVRIQVNNV FNAASITRDL
GFAQEQYLYI NDWTRTQGHL YQDIQLVRLV MYLVLALVIA VACFNIVSTL VMAVRDKASE
IAILMTMGLH RGAIMAIFIL QGALNGLMGC TIGGILGVTL AYNLSAIASS LEQILGIQLL
ASDIYFIDFL PSELHYQDVL VVLLMGLFMS LIATIYPAWK ATKIAPATAL AGR
|
|---|
| |