| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2388 |
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| Symbol | |
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| ID | 4279299 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 2848986 |
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| End bp | 2850788 |
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| Gene Length | 1803 bp |
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| Protein Length | 600 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638135184 |
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| Product | lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA |
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| Protein accession | YP_751071 |
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| Protein GI | 114563558 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR02203] lipid A export permease/ATP-binding protein MsbA |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.496768 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCAGCAT CACCTAAAAA TGAAATGTGG GTCGTTTTCA AACGTTTGAT GGCCTATGTC
GTACCGATGA AAGCTATGTT TATTATGGCT GTTCTAGGTC TTATTACTTA TGGCGCTGTC
GATGCAGCGT TTATCGCATT TATTAAGCCG TTTATTGATG AAGGCTTCAG TCAAACGCCT
GCGATAGTCG CCGGTGTCGA CTTACCAACG CACGGTGGCT TTAACGCCAA TAAAGACATT
ATGTTAATGG CCCCAATCGC GGTTATTTTA ATGTTTAGCT TGCGTGGTGT GGCTAACTTC
GTGTCGACCT ATTGTGTGTC GTACATGAGT GCTCAGCTCA TTATGGATAT GCGTCAACAA
GTGTTTGAGC ACTACCTACG TTTACCTGTG AGTTATATTG ACCGTGAAAA TAGCGGTAAT
TTGATTTCAC GCGTTACGTT TGATACCGAG CAAATTGCTC GTGCATCAGG CAGTGCGTTG
ATTTCAATTG TCCGTGACAG CATGACGGCC ATCGGTATGT TAGGCATTAT GTTCTACTAT
TCGTGGAAAT TGTCATTATG TATTTTGGTG ATAGGCCCCA TCATGGGTGT GGTTATCAGT
GTAGTCAGTA AGCGCTTTCG CAAGGTGTCT AAGCAAATTC AATCTGCTAT GGGCGGTGTA
ACCGCAACCA CAGAACAGAT GATTAAGGGC CATAAAAACG TATTAGTGTT TGGTGGACAA
AAAACTGAGG TTGAACGCTT TTTTCAAGTT AACGATCGTA ATCGCTACCA AAACATGAAA
CTAGCGGTTG CACAGTCAAT CAGCCAGCCG CTCATTATGG TGATTGGTTC ATTCGCATTG
GCGTTTGTGT TGTATGCTGC CACTTGGGAT AGCATGAAAA CCGATTTAAC CGCTGGTACG
TTCGCGGCTA TTTTAGGCGC CATGTTAGCC ATGCTACAAC CGATTAAAAA CTTAACCCGT
GTTAATGCGG AATTTCAGCG TGGTATTGCC GCTTGTACCA CAGTATTTGA ATTATTAGAC
ACTGCGCCAG AACCTGATAA TGGCGTATTT AGTATTGATA GAGTTGAAGG TAAGTTGGCC
TTTGATAATG TGACATTTGC ATATCCTGGC CAAGAAAAGT CTGCACTTAA TGGGATTAAT
TTTGAAGTTA AGCCGGGTAA AACGGTTGCG TTAGTAGGGC GTTCTGGCTC TGGTAAATCG
ACCATTGCCA GTTTGATCAC TCGCTTTTAC GGTGATTTAT CAACTGGTGA TATCCGTCTT
GATGACACCA GTATTTATGA TTACCAACTA AAATCACTTC GTAATCAAGT CGCTCTAGTG
TCGCAACAAG TTACCTTATT TAATGACACC ATTGCCAATA ACATTGCCTA TGCCTACCCA
GGTGAAGTGA CTCGCGAACA AATAGTACAT GCCGCAGAGT TAGCCTATGC CATGGAATTT
ATTGATACTT TACCTGAAGG TCTTGATACC CAAGTCGGCG AAAATGGTGT GTTGCTTTCA
GGCGGCCAGC GCCAACGTAT TGCCATTGCT CGTGCCATGT TACGTGATGC GCCAGTGTTA
ATTTTAGATG AAGCAACATC AGCATTGGAT ACTGAGTCCG AAAAAGCGAT TCAAAAGGGC
CTCGACAATC TTCGTCATAA TCGCACCTCT ATCGTGATTG CACACCGTTT ATCAACCATA
GAAAGCGCTG ATGAAATTTT GGTTATCGAC CAAGGGAAAA TTGTTGAACG CGGCAATCAC
AGTGAGTTAA TTGCCCAAGC TGGCATTTAC GCTAATCTTT ACCAGATGCA GTTTAGTCAA
TAA
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| Protein sequence | MSASPKNEMW VVFKRLMAYV VPMKAMFIMA VLGLITYGAV DAAFIAFIKP FIDEGFSQTP
AIVAGVDLPT HGGFNANKDI MLMAPIAVIL MFSLRGVANF VSTYCVSYMS AQLIMDMRQQ
VFEHYLRLPV SYIDRENSGN LISRVTFDTE QIARASGSAL ISIVRDSMTA IGMLGIMFYY
SWKLSLCILV IGPIMGVVIS VVSKRFRKVS KQIQSAMGGV TATTEQMIKG HKNVLVFGGQ
KTEVERFFQV NDRNRYQNMK LAVAQSISQP LIMVIGSFAL AFVLYAATWD SMKTDLTAGT
FAAILGAMLA MLQPIKNLTR VNAEFQRGIA ACTTVFELLD TAPEPDNGVF SIDRVEGKLA
FDNVTFAYPG QEKSALNGIN FEVKPGKTVA LVGRSGSGKS TIASLITRFY GDLSTGDIRL
DDTSIYDYQL KSLRNQVALV SQQVTLFNDT IANNIAYAYP GEVTREQIVH AAELAYAMEF
IDTLPEGLDT QVGENGVLLS GGQRQRIAIA RAMLRDAPVL ILDEATSALD TESEKAIQKG
LDNLRHNRTS IVIAHRLSTI ESADEILVID QGKIVERGNH SELIAQAGIY ANLYQMQFSQ
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