| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2373 |
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| Symbol | |
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| ID | 4279284 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 2825557 |
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| End bp | 2829105 |
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| Gene Length | 3549 bp |
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| Protein Length | 1182 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 638135169 |
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| Product | ImcF domain-containing protein |
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| Protein accession | YP_751056 |
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| Protein GI | 114563543 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.720279 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTTTAA AATCAATTGG CAAAGGAATT GTCGACACAC TTAAGTCTAA ATGGGCAATT
ACCATAATAG GTTTTTTATG TTTGGCTTTA CTTATTTGGT TTGGTGGTCC TTTAGTGGCT
ATAGCTGGGT ATGAACCATT AGCATCAGCA GCAACACGGG TTATCTTACT ACTGGTTATT
GTTATTATTT TTGGTGCCAT TCACTTTACT CGACAACTCA AGAATAAAAA ACAAAGCGAG
AAAATGGTTG ATAGCTTAAT TAACGGTGAA GAGGGTAACT CTGTGACCGG TGATGACTTA
GCCAAAAGTG AAATCACTGT TTTACAGAAT AAAATGACCC AAGCGTTAGA TATTCTTAAA
AATACCAAGC TAACTAAAAA TAAAAGTATT TACGAATTAC CTTGGTACAT CATGATTGGT
CCGCCAGGAA GTGGAAAAAC CACCGCGATT CAGCATTCAG GTCTTGAATA CCCATTAAAA
GAAAAAATGG GTGTAGATAT GATTGAAGGC GTTGGCGGTA CAAGACACTG TGATTGGTGG
TTTACCAATA AAGCAGTATT AATTGATACG GCGGGTCGTT ATACCACTCA AGATAGTCAT
GTAAAACAAG ACTCTCGGGC ATGGCAAGGT TTTCTGGGGT TATTGAAAAA ATATCGCCCT
GTTCGTCCTA TTAATGGGGT GATAATCAGC ATGGGTATGT CTGATTTATT AAACCAAACC
AAGACTGAGA GAAACTTACA TGCGCGAGCA ATTAAGCAGC GTTTACAAGA ACTGCAAAAT
CAACTGGGTA TGACTTTTCC GGTATATGTT TTATTTTCTA AATCAGATTT AGTTGCCGGT
TTTAATGAGT TTTTTGATGA TTTAACCAAA GAAGATTGTG AACAAATTTG GGGTATTACC
TTCCCATTAA ATGCAGATAC AGAAGACACT GATATTGTTA GTTCATTTAA TAAAGAATTT
CATGATTTAT TATTAAATTT AAATGCAAGA TTAAATAGCC GCCTAAAAAA CGAACGCGAC
CTAGAGCGTC GTGCGGCCAT CTATGAGTTT CCAAAGCAGC TTCGGTTATT ACAGAGCTCA
GCAGATGATT TTCTTAAAGA AATTTTTGCG CCTAATGCAT ATGAAGAAGC ACCGCTATTG
CGTGGTGTTT ACTTAACCAG TGCAACTCAA GAAGGTACGC CAATCGATCA TCTTTCTAGT
CACTTATCTA GTGGCATTAA GAGTAAAGCT AAAACCTTCG CCGCAAATAA ACAACGCAGC
TATTTTATTA AACGCCTGTT AGAAGACGTT ATTTTTCCAG AGAAAAATTT AGCATCAACC
AATCGAAAGC ATACAAACCA TAATAAACTT TTACGTAAAG TATCAGTAGG CATTGCTGCA
GGTGTGACCT TGCTTGCTAG TTATGTTTGG TGGCAAAGTT ATGATTGGAA TAGACAATTG
ATTGATGATA CCTATCAAGG TGTCACGACA TACAAAACCA TTACCAGTGG TGGGTTAAAT
GCTAAGTCAG ATGTGATTAC ACTTACCAAA GGCTTAACAT TAATTCGTGA TCTCCCTGTT
GGTTTTGGTA CTGATAAACC TGAGGATGCA TATACCTTTG GTTTGTATCA AGGAGATAAG
CTTAAACAAC CTGCTACAGC GGCTTATCAC CGTGCTTTAG AAACACATTT AATGCCTTAC
CTACAAAGTG TGCTTAGTGC AGAAATGGAC GCTAATGGTG AGCACCTTAA CTACCTATAT
GAAACATTAA AAACCTATTT AATGTTGTAT TTTCCTGAGC ATTTTGACAA AAGTGATGTG
CAAGTCTGGT TCTCCGCTTA TATCGATAGA AACATTGTTG GTGATGTAAA TGGTGAGGTT
AGGAAAGAGC TAAATAAGCA TATAGATACA TTACTGTCTT TAGGGGTTAG AGGTCATCAA
TACGACAGTA TGACAGTTGA TAGTGCTCGG ATTAATTTGA CCATGTTACC TCTGGTTGAG
CGCGCATATC AGCGTTTAAA AAGTGATTTT TCAAACAGCA GTATCCCAGA TTTTAAACTG
GTTGATATTC TGAGTTTAGA CAGTTTAGAT GGTTTGGTGT TCACCAGTGG TCGCCAATTT
AATCAAGGCA TTCCTGGTCT TTATACTTTT AATGGTTTTC ATGGCATTTT TAGTATAGAA
AAGAATAAGA TAATAAAAAA CCTAACCGCA GACAGTTGGG TATATGGTGA TGAGTTAGTT
GATTTAGACG AACAAGCCAA AGCGCAGATT ACCCAAGAGT TAGAAAACAG ATACATTCGT
GATTATATTT TCTATTGGGA AGATTTCTTA AGCGACCTTG CTATCAAACC ATATTCAACA
CGTGAGGAAG CTGAGAGTGT TACTGCAGCA CTTGCTAGCC CAGATCAACC GATCAAAACC
ATTATTACCG CAGTTCAGAA AAATGTGAAT TTAACTAAGC TTCCTGCCGA TTCAAATAAT
TTAAAGGCCG CGGCGGAAGT GGCCGGTAAT ATTTCTGATG TTGCATTTCG ATCTAAAAAA
GCACGATTAA ATAGGCTATT ACCCGATACA GCAATAGAGT TAGATATTGA TTTGCCGGGC
AAGGATGTGG AATTTGCTTT TGCAGAATTG CTCAAAATCA ATCCCGCTGA TATTGATAAA
ATTCAAACGA CGTTACGCGC TCTTAATCGA AACTACAATA AATTATCAAT GCAGTCAGAA
GGACAAGGTA ACGTTGTTAA TCAAGCCACA GAAGAAAGCT TTGCTCAACT AGGTTCTAGT
TTATCTGAGC AATTGATGGA TCTACCTTAT CCAGTAAAAA ATTGGTTAAG TGAAGTGGCT
TATCGTACTC GCTCGTTTGC CAAATCCAAT CAAAGTCAGC GTTTCAACGG TATTTGGCGT
TCGCAAGTGT TGGCCGAATT CAATCGAGCG ATTGCAGGGC GTTACCCATT TGACCGAAAA
TCGTCAGAAG ATGTCAGACT AAAAGACTTC AGTAAGTTTT TTGGTTATGG CGGCACCTTA
GATAAATTTT GGGATCAATA CCTCGCTTCA CATGTAGATA CCAGCAAAAA ACCTTGGCGT
TTTAAGCGTA ATATCGGCAT TCGTAATGAC ATTTTAGAAA TGTATCAACG CGCTGAAATT
ATTAAAGAAG CATTTTTCGA ACCAGGATCT AAGCAGCCTA TTGTTAACTT TTCATTAGAA
CCGGAATTAT TAGATAGAAG TGTGAGTATG TTTTTATTCG AAATAGACAG CCAACAGCTG
AAGTATCGAC ACGGTCCTAC TCGCAAAGAG TTATTTACGT GGCCTGGCCC TGGTGCAAAT
AACGAAACAC GAATTGCATT TTCACCTCCT AACGGCGGGC GCTCTATCAA TAAGAAATAT
GAGGGTGAAT GGTCATTCTT CAAATTATTA GATGAATTAA GTAAAAAGCG TCCACAAACT
AAAAAAGATG GCAAGTTACT CATCAATCTC AAAGGCTACA ACGCTGTACT GAAATTGACC
GCAAACAGTG TTAACAATCC ATTTTGGATG GCAAATATGG AGAAGTTTAG ATGTCCTGCG
AACCTTTAA
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| Protein sequence | MSLKSIGKGI VDTLKSKWAI TIIGFLCLAL LIWFGGPLVA IAGYEPLASA ATRVILLLVI
VIIFGAIHFT RQLKNKKQSE KMVDSLINGE EGNSVTGDDL AKSEITVLQN KMTQALDILK
NTKLTKNKSI YELPWYIMIG PPGSGKTTAI QHSGLEYPLK EKMGVDMIEG VGGTRHCDWW
FTNKAVLIDT AGRYTTQDSH VKQDSRAWQG FLGLLKKYRP VRPINGVIIS MGMSDLLNQT
KTERNLHARA IKQRLQELQN QLGMTFPVYV LFSKSDLVAG FNEFFDDLTK EDCEQIWGIT
FPLNADTEDT DIVSSFNKEF HDLLLNLNAR LNSRLKNERD LERRAAIYEF PKQLRLLQSS
ADDFLKEIFA PNAYEEAPLL RGVYLTSATQ EGTPIDHLSS HLSSGIKSKA KTFAANKQRS
YFIKRLLEDV IFPEKNLAST NRKHTNHNKL LRKVSVGIAA GVTLLASYVW WQSYDWNRQL
IDDTYQGVTT YKTITSGGLN AKSDVITLTK GLTLIRDLPV GFGTDKPEDA YTFGLYQGDK
LKQPATAAYH RALETHLMPY LQSVLSAEMD ANGEHLNYLY ETLKTYLMLY FPEHFDKSDV
QVWFSAYIDR NIVGDVNGEV RKELNKHIDT LLSLGVRGHQ YDSMTVDSAR INLTMLPLVE
RAYQRLKSDF SNSSIPDFKL VDILSLDSLD GLVFTSGRQF NQGIPGLYTF NGFHGIFSIE
KNKIIKNLTA DSWVYGDELV DLDEQAKAQI TQELENRYIR DYIFYWEDFL SDLAIKPYST
REEAESVTAA LASPDQPIKT IITAVQKNVN LTKLPADSNN LKAAAEVAGN ISDVAFRSKK
ARLNRLLPDT AIELDIDLPG KDVEFAFAEL LKINPADIDK IQTTLRALNR NYNKLSMQSE
GQGNVVNQAT EESFAQLGSS LSEQLMDLPY PVKNWLSEVA YRTRSFAKSN QSQRFNGIWR
SQVLAEFNRA IAGRYPFDRK SSEDVRLKDF SKFFGYGGTL DKFWDQYLAS HVDTSKKPWR
FKRNIGIRND ILEMYQRAEI IKEAFFEPGS KQPIVNFSLE PELLDRSVSM FLFEIDSQQL
KYRHGPTRKE LFTWPGPGAN NETRIAFSPP NGGRSINKKY EGEWSFFKLL DELSKKRPQT
KKDGKLLINL KGYNAVLKLT ANSVNNPFWM ANMEKFRCPA NL
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