Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_2366 |
Symbol | |
ID | 4279277 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 2818268 |
End bp | 2819056 |
Gene Length | 789 bp |
Protein Length | 262 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 638135162 |
Product | virulence protein, SciE type |
Protein accession | YP_751049 |
Protein GI | 114563536 |
COG category | [R] General function prediction only |
COG ID | [COG4455] Protein of avirulence locus involved in temperature-dependent protein secretion |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAACAAA TTCAACAAAT GCTACAGAGC GGCCAACTAC AAGATGCAAT TCAGTTAGTT GAGACACAAT TAAAAGACGA CCCGATGAAT ATTGACTTAA AAGGTCAACA TGTTGAGTTG TTGTGTATTA ATGGTGAACT TGAGCGTGCA GACAAACAAT TAAACTTTTT AGTGCAAAAG CATCCCGACT TTTTAATTGG CGCAGCAAAT TTACGTCAGC TGATCCGTGC TGAACAAGCC CGACAAGATT TTATGGCGGG CAAAGCTGTA CCACAACTTT TTGCTGAGTC TGATGCGCAC GTTGAAGCAT TAATGAAATT ACGTTTAGCA ATGGTTGATG CTCAAGATGA TGTGACTCAG TGTGCAAACA GCCTTGAAAC TCTGCGTCCG GAAATAAACT TAGTATTAAA TGATATCACT CATCAAGAAA TTCGTGATTT AGATGACACT TTAGGTGGTT TCATCGAAAT TTTTGGTACT GACGGCAATT TTTATTTAGC GCAGTTATCT GAAATTGATT ATATCAATTT TAAACCTGTA ACTTCATTAC TGGAAATGGT TTGGCGCCGG GTTGATCTTG CCATTAAAAA TGGACCAAGT GGTGAAGCGC ATATTCCAAT GATTTATGGT GGCAGTGAAA CTGATGCGCA AAAACTGGGA CGAGAAACCG ATTGGCATGA AATCGCGACT AATGTTGTTG CTGGCAAGGG CTTAAAGATG TGGTTTGTCG ATGATAATGC TATCGCATTA AATCAAATAA CTAAAGTTAC GACTCCAGTG TTGCAGTAG
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Protein sequence | MKQIQQMLQS GQLQDAIQLV ETQLKDDPMN IDLKGQHVEL LCINGELERA DKQLNFLVQK HPDFLIGAAN LRQLIRAEQA RQDFMAGKAV PQLFAESDAH VEALMKLRLA MVDAQDDVTQ CANSLETLRP EINLVLNDIT HQEIRDLDDT LGGFIEIFGT DGNFYLAQLS EIDYINFKPV TSLLEMVWRR VDLAIKNGPS GEAHIPMIYG GSETDAQKLG RETDWHEIAT NVVAGKGLKM WFVDDNAIAL NQITKVTTPV LQ
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