| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2360 |
|---|
| Symbol | |
|---|
| ID | 4279271 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 2809539 |
|---|
| End bp | 2811395 |
|---|
| Gene Length | 1857 bp |
|---|
| Protein Length | 618 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 638135156 |
|---|
| Product | Rhs element Vgr protein |
|---|
| Protein accession | YP_751043 |
|---|
| Protein GI | 114563530 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTTAAGG CCACTCAAAA AAATAATATC ATCAGTATCA CAACGCCATT AGGTAAGGAT
ACTCTGTACC TAACGCATTT TACTGCCACA GAAGCCATCT CTCAGCTTTT TTCAATCAGC
GTCTCCATGT TCACGGTTGG CACCCAGATT AGTCTCGACA GTTTAGTGGG TAAAAATGTT
TGTATTACTT TACGTAATGC CGAAAGTAAT GGTGCAGTTC GATACTTTCA TGGGGTGGTA
AGTCATCTTG AGTCTGCTGG AATGCGGACC GCAGCGTCAG ACGATGCACA GAATTATATA
GATTATCAAG CCGTTATAGT GCCTCAGATG GCATTGATGA AAAAACGCAG TAATTGTCGA
ATTTTTCAAA ATAAGTCAGT CATTGATATT GTTAAAGACT TGTTTGGTCA ACATAAAGTT
GAATTTCAAA ATAAAACCAC CAACACCTAC CCTAAATATG AATACTGTGT GCAGTATTTA
GAATCAGATG TCGATTTTGT TTGTCGTTTA TTACAGCAAG AGGGAATTTT CTTCTTCTTC
GAGCATAGTG TTAGTGCTCA TACCCTAGTA CTTGCTGATG ATATAAACGC CTACAAACCT
TGTGCAGAAG AGAAGGTTCG TTGTTTCTCA GGTCATTTAG CCGAGTCGCA CGTGTCTCAT
TGGCAAGGCG GCATGAGCAT GGTGAGTGGC GGTTTTATTC AAAAAGGTTA TGACTACGAA
CAACCTAAAT TATACCCATC AGGTAATCAT ACTAACGCAA ATCTTCCTGA ACAAAGTGCA
CTTGAGGTGT ACGATTATTT GGGCGAGTCT GAGTTCAACA AGCGTGCTCA ACCGTTTGCC
AATAATCAAC TTGAAGCCCT GCAAAAAGAC ATGAATAAAT GCAGCGGCCA AGGCGATTGT
CGTAGTTTTA TGGTGGGTAA GTTTTTTACT TTCAAAGATC ATGAAAACGC GAGTTATAAA
GGTAAGAGCT TTGTTATAAG CTCACTGAGA ACGTCGGCTA CTCAGCCTAA TCAGTCAGGC
ACAAGCCAAT CAATGTCTGG CAGTGTTTAT CAAAACGATT TTGAATGTGT TCCTAAAAGT
ACTCCTTATC GCTCACAGCT TCATTTACGT AAACCATTAA TTAATGGGGT ACAAACAGCG
GTAGTGACTG GTGAACCTGG TGATGAACAA CATATTGATA AATTTGGCCG TGTAAAAGTA
CAGTTTCATT GGGATCGTGA AGGCGAGTTC AATAGTAAAA GTTCATGTTG GATCCGTGTC
GCACAAAGCT GGGCTGGCAA CAAGTGGGGT GCATTCTTCT TCCCTCGCGT AGGCCAGGAG
GTGTTAGTTG AGTTTATCAA TGGTGACCCT GATCAACCGA TTATCAGCGG TGCGGTGTAT
AACGCAGACT TAATGCCTCC TTATGCATTA CCGGCTAAAA AGACTCAGTC TGGCATTAAA
ACCCATAGTA CTAAGGACGG TGGTGCCGAC AATTTCAATG AGTTACGTTT TGATGATGAA
AAAGGCAAAG AGTTATTATT CCTCCAAGCA GAAAAAGATC ATCTATTGAA TGTAAAACAT
GATCAAAAAG ACACCATAGG CAACGACCGT TTCACTGACA TCGTTAATAA CGATAACGTT
AAAATTGGTA ATAATCGACT AGAAGACATA GCCAATAATG ACAGTTTAAA AGTCGGTAAA
GTACTTAATA TTGAAGCGGG TAATGAAATT GTCATTAAAA CCGGCAGCGC ATCAATCAAA
ATGAGCAGCG ACGGTTCGAT TTCTATCGAA GGCACCAACA TTACTATTAA AGGGACAAAC
GTTAAGGTTA ATGGTACCAG TATTGCCTTA AAAGCTGCTC AAATTAAGTT GAACTAG
|
|---|
| Protein sequence | MLKATQKNNI ISITTPLGKD TLYLTHFTAT EAISQLFSIS VSMFTVGTQI SLDSLVGKNV
CITLRNAESN GAVRYFHGVV SHLESAGMRT AASDDAQNYI DYQAVIVPQM ALMKKRSNCR
IFQNKSVIDI VKDLFGQHKV EFQNKTTNTY PKYEYCVQYL ESDVDFVCRL LQQEGIFFFF
EHSVSAHTLV LADDINAYKP CAEEKVRCFS GHLAESHVSH WQGGMSMVSG GFIQKGYDYE
QPKLYPSGNH TNANLPEQSA LEVYDYLGES EFNKRAQPFA NNQLEALQKD MNKCSGQGDC
RSFMVGKFFT FKDHENASYK GKSFVISSLR TSATQPNQSG TSQSMSGSVY QNDFECVPKS
TPYRSQLHLR KPLINGVQTA VVTGEPGDEQ HIDKFGRVKV QFHWDREGEF NSKSSCWIRV
AQSWAGNKWG AFFFPRVGQE VLVEFINGDP DQPIISGAVY NADLMPPYAL PAKKTQSGIK
THSTKDGGAD NFNELRFDDE KGKELLFLQA EKDHLLNVKH DQKDTIGNDR FTDIVNNDNV
KIGNNRLEDI ANNDSLKVGK VLNIEAGNEI VIKTGSASIK MSSDGSISIE GTNITIKGTN
VKVNGTSIAL KAAQIKLN
|
|---|
| |