| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2355 |
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| Symbol | |
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| ID | 4279266 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 2802296 |
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| End bp | 2806780 |
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| Gene Length | 4485 bp |
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| Protein Length | 1494 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638135151 |
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| Product | YD repeat-containing protein |
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| Protein accession | YP_751038 |
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| Protein GI | 114563525 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGGTCA GTAATTTCAA TTTTAAAGGT CATAACCGTT ATATCGTTAT CGTGCCTGCC
AGTGCGTCAA CGCCAGCTGG ATTCCAGTTA TTAACGTTTG AGCAAAACAA TAATGTTAGT
GAGATAATTA ATGAAATCTC GCCTCATTTA GTCCGTGATC GTAATGCATT AATTTATGCG
CGCAGTCTGG TGATGAATGC GGGTGTAAAT GCTAGCTTAA ATCCAAGAGA TATTACCCGT
AAACTGAGTG ACATTATTGA GCGCAATTTA CTCAGAGTGT ATGGTGAAAC ACCCAAACAA
CAAATTCAGC ATTCAACTGA AACGGGCACT CTAGGCGCGA GTTCAACCAA TACAAAAGCA
CCCAAAACCA ATAAGGGCAA ACAAACTTCT GCGTCAGTTC AATCCGGGAC TGTGGCGAAT
CATTCCCCGA CGGAAGTGGC TATTGATCAG CAAGAGTGCC GCAGCGATCC CGTATCGATG
TTAAGTGGCG AAGAAATTTT ACCGTTAGTC GATTTTGAGC TTAATGGCTT AATGCCGCTA
ACGTGGTGTC GTTTGTATCG TTCGAGCAAA ATTCTTAGCA ATGTTGGTAT GGGTTACGGC
TGGCGACATA ACTTTTGTGT GCAGCTGGAT CATCAATATC AAGCGCCAGC GAAAGTTGGG
CCTAAAAAAC CCGGTAAATA TTGGTTTGAA TTAACCGACG ATGAAGGCCG AGTACATGTG
TTCGACTCGG TTAAACGAGG GCAAACCAGT ATTCAACTTT CAACAGGTTG GTCGCTAGTA
CATCAAGCCG ATGGCCGCCA TGTATTAATA AAGCCCGATG ACAGCCATTG GGCATTTATA
CAAAAAAACG TTGCTGGTAA ACAGGTTTGG CAGCTTGAAA CGATTAGTAA TCATCAAGGC
CAATACTTTC AGCTGTATTA TGATCATCAA GGCCGCTTAA CTCAAATAAC AACAGGCCCT
AAACGTGGCG TGTTGTTATT TTACAATGCA CAAAGCAATT TGTTAAAAGT CGCTTCGTAC
ATGTTAGATA ACGAAGGCAA CAAACAAATT CATCAGAATT TGTTGGCTAG CTATCAATAC
GATGATGATC AAGCCCTTAT TGCCGCCACC GACAGCAACG GACGAGTAGA GCGCTACAGT
TATGTAAAAG TGAAGTCGGC TACAAATGCC TCTGACCGCG ATGTCCCATA CAACAACAGA
ACCTCGACCT ATTTATTACA ACGCAGAACT CGGGCATCAG GCTTTAGTCA TCACTTTTTG
TGGGACGGAC AAGACCAGCG CGCTAAATGT ATTGAGCAAT GGGGTGACGA TGATATTTAT
CATTATCACT TTGAATATAC GGCACTCGTT AACGGTATAA AAAGCAGTTG TACTGACTCT
TTAGGTCATC GCGAGACTTT TATTCACAAT GCGCAAGGGC TATTGACAGA GCATCACAAC
CCCAATGGCA GTGTGATACG TCATCAATAT GATGCCGTCG GTCGTAAAGT GGCTACCGTT
GATGCGTGTG ATAATAAAAT ACAATACAAC TATAACGAGC AAGGGCAGTT ACTGGCTGTT
ATTCAAGCGG ATGGTGGTAC CACAAGGTTT GAATATAATC GCTTAGGCCA ACGAATTGTG
ACCATAGATG CGATAGGCCG AACGGCTAAA AGACATTACG ATGCCACAGG TCGGTTGTTG
TCTGAAAGTG GTTTTGATGG CCGTCAAAGT CAATTTCAAT ACAATGATGC TGGGAAGTTA
ACTCAAAAAG TCGATGTTAA TGGGGTCATT CATCGTTACC ATTGGGACCG CGATGGCGAA
TTGCTGGCAA CGCAAGTCGG TGATGCGTTA ACCCGTTTTA GCCATGACAG ACTGGGACGA
GTTAACGCCA CTATTAATCC GCAAGGTCTG GTCACTGAAT TTATTCGTGA CAACAAAGGC
CAAATAGTCG AAAGTAAATC CTATCCACAA GATCATCAAG ACAAGCCTGA AGAAGCCATT
AGTCATTATT ATCAGTACGA TGATGCCGGA CGTATTATTC GCCAGCGTCA ACAAGCTGAT
GTTGTTGGTG AGCAAGAACT CCGTAACGAT AGTGAGTACA TTGAAAACAT TATCGACTAT
GACGGTTTAG CCCAACCGCG CCAACAAACA TTTGCCGATG GTAGTTGGCT GAAGTTTTTT
TATGATAAAG AACGTAACTT AAACCGCATT GAGCGAAGTG ACGGGGCGCA GTACCGTATT
GAATACACAG CAACAGAGCA ACCTAAAACC TTAATTGGTT TTGATGGCCG TGAACAACAT
TATCAATATG ACGCCAATGA TAATTTAGTG GCAGTGAACG ACAGTGATAT TCGGTTTGTT
GAGCTAAAAC GTGATTCAAT GGGGCGCATT TATCAGCAAA GTAGCCATGT AAAACTTGAG
CCCAGTGCCA CATCTGCATT ACTGAATACT CAGAACTTTT ATCAATATAA CCCGATAGGG
CAAATAACTC GCGCCCACAA CCAACACCGT ACAGTGCAAC AACACCTTGA CGCTCAAGGG
CGTATAAATA GTGTATTGCA AAGCCAGTGG CAACTTGACT ATCAATATAA TGATTCAGGT
AAACGCAGTC GTTTAACGTT ACCTGATGGG CAACAGATTG ATTATCAATA CAATAAAAAC
AGTCAATTAA GTGGCATTAG TCTTAAAGAC AATAGCTCAT CGAAGCAGCG CATACCGCTG
GCTCAATATC ACTATCTGCC ATCGGGTTTA TTGCATAAAA CGATACAGGG TAATCAGCTT
GAACTCACTC ATGCTTATGA CAGCCATTCA AGATTAATTG AGCAGGCATG GCGACATGCT
CGCTCAGATA ACGCAGCATC AGAGCTTATA TTAGAAGAGC TTTCCTCATC AGAGTCAGTT
CTGTTTGTAT CAAGACGTTA TCAATACGAT AAACAACATC AATTACTTCG TTGTGATAGC
AACATTGCAG AGCAGGGCGC AACTAGTGAG GTTCAAACCT CCCAAGGGCC TGAAACCAAA
AGCGCGCCCG ATGTTAAGCA ATTTCGCTAT AACAACATCA GCCAACTAGT CAGTGACAGT
TATACTCGTG TAACGGATAA CCCTACTGGC AACAAAACCA GTGTTCAGCA ACAATACCAA
TGGGATGGAT TTGGTAATCC TACTCATTCT CTTCGTGTTG ACAATAACAG TGCTGATGCC
AGTATTATCA GCTCAACAGC TGACTTAGAG CGTGCAGAAC ACATTCAACA GCCAGCGTCA
TCGGCTTTGT CATCCGACAC AGCAAGGCCC AATAAAAACC TTAATGATGT GGTGGTTAAC
AACGACCGCT TAATGAGCAT GGCTGGGGTC GATTACCGTT ACGACGCCAG TGGCAACCAA
ATCAGCCAAG TGGGTACGGG CGATAAACAA CAGCGTAGCT TTAATGGCTT AAACCAACTG
GTGCAAATCA ACGTTAATGG CAAGCTGACG CAATACGAAT ATGATGCCCT AGGCCGTCGC
AGTGCAAAAA TCACCGAACT CGGTCGCACC GACTTCATTT GGGACAATCA TCAGCTTATT
GGCGAATGCA CTTTAGGTGA ATACACCTGG TATATTTATC AGCCTGATAC TTTTACACCT
GTAGCACTCA TTAAAGCAGG GCAAGTATAT TATTATCACC TAGACCAACT CGGCACACCC
ATTTGCTTAA CCGATGAAAA CGTTCAAATC GTCTGGCGCA GCCAACAAGA CGTGTTCGGC
CAGACAATTG AAAGTACATC TATTAAAAAT ACAGATATTG AATATACAGA TTTTAAAGAT
GCAGCCAAGC AAGACAAGAT AACTAACCCA ATCCGTTTTC AAGGGCAATA CTTTGATGAC
GAATCAGGGT TACACTACAA CCGCTTTAGG TACTACAGCC CTGGGCAAGC TAGATTTATA
CATCAAGACC CGATAGGATT AGTGGGCGGG ATAAACCATT ATCAATATGC GCCTAACCAT
GTGAACTGGG TGGATCCGTT TGGGCTGAGT TGTAAAGAAA ATGGTTGGAA TACGTTCCAA
AAAAACTCTA AAGGGATCTT TTCATCTGTT ACGCAGGCTT CCCAAGGTTA TAAATTTTGG
AAAGCGCAAA ATTGGCCTGA GCTAGAGGAT TTACTTGGGC CAGGTTCTTG GCCCCCAAAC
AGAGGCTTTG TGAGTATAGA AACTGTAGAT TTAAATATTG GGAGCAAAAT TGATCGGTTC
GGTGGTTTTT TAGATTCAAA TGGTGAATTT CGCGATTATG GTACATTCGT TTCTCCTGAA
GGTAACTCAT TTACTAGTAG GGCTTTACCT TCTTCGACAA AAAATAAAGA CTATAATGCT
TATGAAGTTA TTGAACCGCT AAAAGTAAAT TCTGGTCCTG CTATTCCTTG GTTTGGTCAG
CCTGGAGGGG GTACACAATA TGAGTTACCA AGTTCAATTG AAAATTTGAA AGATAAGGGA
AAAATTAAGG AAAAACGGCC ATCTAACAAT AAGGATGATT TATAA
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| Protein sequence | MTVSNFNFKG HNRYIVIVPA SASTPAGFQL LTFEQNNNVS EIINEISPHL VRDRNALIYA
RSLVMNAGVN ASLNPRDITR KLSDIIERNL LRVYGETPKQ QIQHSTETGT LGASSTNTKA
PKTNKGKQTS ASVQSGTVAN HSPTEVAIDQ QECRSDPVSM LSGEEILPLV DFELNGLMPL
TWCRLYRSSK ILSNVGMGYG WRHNFCVQLD HQYQAPAKVG PKKPGKYWFE LTDDEGRVHV
FDSVKRGQTS IQLSTGWSLV HQADGRHVLI KPDDSHWAFI QKNVAGKQVW QLETISNHQG
QYFQLYYDHQ GRLTQITTGP KRGVLLFYNA QSNLLKVASY MLDNEGNKQI HQNLLASYQY
DDDQALIAAT DSNGRVERYS YVKVKSATNA SDRDVPYNNR TSTYLLQRRT RASGFSHHFL
WDGQDQRAKC IEQWGDDDIY HYHFEYTALV NGIKSSCTDS LGHRETFIHN AQGLLTEHHN
PNGSVIRHQY DAVGRKVATV DACDNKIQYN YNEQGQLLAV IQADGGTTRF EYNRLGQRIV
TIDAIGRTAK RHYDATGRLL SESGFDGRQS QFQYNDAGKL TQKVDVNGVI HRYHWDRDGE
LLATQVGDAL TRFSHDRLGR VNATINPQGL VTEFIRDNKG QIVESKSYPQ DHQDKPEEAI
SHYYQYDDAG RIIRQRQQAD VVGEQELRND SEYIENIIDY DGLAQPRQQT FADGSWLKFF
YDKERNLNRI ERSDGAQYRI EYTATEQPKT LIGFDGREQH YQYDANDNLV AVNDSDIRFV
ELKRDSMGRI YQQSSHVKLE PSATSALLNT QNFYQYNPIG QITRAHNQHR TVQQHLDAQG
RINSVLQSQW QLDYQYNDSG KRSRLTLPDG QQIDYQYNKN SQLSGISLKD NSSSKQRIPL
AQYHYLPSGL LHKTIQGNQL ELTHAYDSHS RLIEQAWRHA RSDNAASELI LEELSSSESV
LFVSRRYQYD KQHQLLRCDS NIAEQGATSE VQTSQGPETK SAPDVKQFRY NNISQLVSDS
YTRVTDNPTG NKTSVQQQYQ WDGFGNPTHS LRVDNNSADA SIISSTADLE RAEHIQQPAS
SALSSDTARP NKNLNDVVVN NDRLMSMAGV DYRYDASGNQ ISQVGTGDKQ QRSFNGLNQL
VQINVNGKLT QYEYDALGRR SAKITELGRT DFIWDNHQLI GECTLGEYTW YIYQPDTFTP
VALIKAGQVY YYHLDQLGTP ICLTDENVQI VWRSQQDVFG QTIESTSIKN TDIEYTDFKD
AAKQDKITNP IRFQGQYFDD ESGLHYNRFR YYSPGQARFI HQDPIGLVGG INHYQYAPNH
VNWVDPFGLS CKENGWNTFQ KNSKGIFSSV TQASQGYKFW KAQNWPELED LLGPGSWPPN
RGFVSIETVD LNIGSKIDRF GGFLDSNGEF RDYGTFVSPE GNSFTSRALP SSTKNKDYNA
YEVIEPLKVN SGPAIPWFGQ PGGGTQYELP SSIENLKDKG KIKEKRPSNN KDDL
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