| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2340 |
|---|
| Symbol | |
|---|
| ID | 4279252 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 2786728 |
|---|
| End bp | 2787600 |
|---|
| Gene Length | 873 bp |
|---|
| Protein Length | 290 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 638135137 |
|---|
| Product | succinyl-CoA synthetase, alpha subunit |
|---|
| Protein accession | YP_751024 |
|---|
| Protein GI | 114563511 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0074] Succinyl-CoA synthetase, alpha subunit |
|---|
| TIGRFAM ID | [TIGR01019] succinyl-CoA synthetase, alpha subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.516028 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGTTT TAATTAACAA AGATACCAAG GTAATCTGTC AAGGTTTCAC TGGTGGTCAG
GGTACTTTCC ACTCTGAACA GGCGATTGCT TATGGCACGC AAATGGTTGG TGGTGTTTCT
CCTGGAAAAG GTGGTCAAAC TCACCTAGGT CTTCCAGTGT TTAACACTGT TAAAGACGCT
GTAGCAGCAA CAGGTGCAAC TGCAACTGTT ATCTACGTAC CAGCTCCTTT TTGTAAAGAC
GCTATCCTTG AAGCAATCGA TGCTGGCCTT GAGCTAATCG TTTGTATCAC TGAAGGTATC
CCTACACTTG ATATGCTTCA AGTGAAAGTG AAACTTGAAG AAACTGGCGT TCGCATGATC
GGTCCTAACT GCCCAGGTGT TATCACTCCT GGTGAATGTA AGATTGGTAT TATGCCTGGT
CACATTCATT TACCTGGAAA AGTAGGTATT GTTTCTCGCT CTGGTACATT AACGTACGAA
GCGGTTAAGC AAACTACTGA TGAAGGTTTC GGCCAATCTA CTTGTGTAGG TATCGGTGGC
GACCCAATTC CTGGCACTAA CTTCATCGAC GTATTGGAAA TGTTCCAAAA CGATCCACAG
ACTGAAGCGA TTGTTATGAT CGGTGAAATC GGTGGTAATG CTGAAGAAGA AGCGGCTGCT
TATATCAAAG CACACGTAAC TAAGCCTGTT GTATCTTACA TTGCTGGTGT TACTGCACCA
GAAGGTAAGC GCATGGGCCA TGCTGGCGCA ATTATCGCTG GCGGTAAAGG TACTGCTGAA
GATAAGTTTG CTGCTCTAGA GGCTGCTGGC GTTACGACTG TTCGCTCTTT AGCTGACATT
GGTAAAGCAC TACGTATCAA AACAGGTTGG TAA
|
|---|
| Protein sequence | MSVLINKDTK VICQGFTGGQ GTFHSEQAIA YGTQMVGGVS PGKGGQTHLG LPVFNTVKDA
VAATGATATV IYVPAPFCKD AILEAIDAGL ELIVCITEGI PTLDMLQVKV KLEETGVRMI
GPNCPGVITP GECKIGIMPG HIHLPGKVGI VSRSGTLTYE AVKQTTDEGF GQSTCVGIGG
DPIPGTNFID VLEMFQNDPQ TEAIVMIGEI GGNAEEEAAA YIKAHVTKPV VSYIAGVTAP
EGKRMGHAGA IIAGGKGTAE DKFAALEAAG VTTVRSLADI GKALRIKTGW
|
|---|
| |