| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2335 |
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| Symbol | cpdB |
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| ID | 4279247 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 2781380 |
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| End bp | 2783479 |
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| Gene Length | 2100 bp |
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| Protein Length | 699 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 638135132 |
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| Product | bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein |
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| Protein accession | YP_751019 |
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| Protein GI | 114563506 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0737] 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases |
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| TIGRFAM ID | [TIGR01390] 2',3'-cyclic-nucleotide 2'-phosphodiesterase
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTAAATA AAAAACTTCT TGCCGTTGTT ATCGCTGGTG CACTGGGATT AGGCGGTTGC
GGCTCTGATA ATGACGATCA AACAAGTACT GTTGCTGCAG ATATCAAGTT ACGTGTAATG
GAAACCACAG ATCTTCATAC CAATATGATG GATTACAACT ATTACTCAGG TAAAGAAGAT
AAGACCATCG GTTTGGTACG TACAGCAAGT TTAATCAATG CAGCACGCGC CGAAGCCACT
AACTCGGTAT TAGTCGATAA CGGTGATTTA TTGCAAGGTA GTCCAATGGG AGACTATATT
GCCAATAAAT TTAAAACTGA AAACAACATG CTAACCGACA CTCATCCTGT GTACAAGGCA
ATGAATACCC TAGACTACGA AGTCGGTAAC ATTGGTAACC ATGAATTTAA CTATGGATTA
TCATTCCTTG AGCAATCACT TGGTGGCGCT AACTTTCCTT ATATTAATGC CAACGTAATT
TGTGCTGATA AAGATGGTTG CTGGGATGAT GTATTATTCA GTGAAAACAT GTTCACACCG
TATATTATTA AAGACAAAGT CGTTACCGAT GTTGATGGTA ATGAACATAC AATAAAAATT
GGTTACATCG GCTTTGTACC ACCACAAATT TTACAATGGG ATAGAGCTAA CTTAGACGGT
AAAGTTGAAG TATTAGGCAT AGTTCAAGCG GCGAATAAAT TTGTGCCACA AATGAAAGCA
GAAGGGGCTG ATATCATTTT AGCCATTCCG CATTCAGGTA TTGGTTCAAG TGAAAACCCT
GGCGACCCAT GGGCAGAAAA CGCAACCTAT GCATTAACCA ACGTCGATGG TATTGATGCG
ATTTTCTTTG GTCACAGCCA CTCTGTATTC CCGTCTGCAA CTTACAGCGA CTTACCAAAT
ACTGACGTAG ACAAAGGTTT ATTGAATGGC GTTCCTGCCG TAATGCCTGG CCGCTGGGGT
GATAACTTAG GTGTGGTAGA CTTAGTTGTA CGCCAAGTAG AAGGGAAATG GACCGTAATT
CATGAAGAAT CAACTGCTAA AGCACGCCCA ATTTACGACA ATGCTAATAA AGTAGCATTG
GTTGAAGGTG AAGCTAGCTT ACGTGATGCA ATTGAAATTG AACACAATGG TACTATCGAA
TATGTTAGCC AACCTATTGG GGTTGCTGCC GCTAACATGT ACAGCTTTTT AACTTTAGTT
CAAGATGATC CAACGGTTCA GATTGTATCT AATGCTCAAA TAGCGCGTGT TAAAACATTA
ATTACTGATG ATCTAAAAGA TTTGCCAATC TTGTCAGCAG CAGCACCATT TAAAGCCGGT
GGACGTTATG CTGAAGGAGA TGCAAGCCAA TATGTACAAG TTGATGCTGG CGACCTTTCG
TATAAGAACG CTGCTGACTT ATACCTATAC CCAAATACTA TGGTTGCAGT TAAAGCTACC
GGTGCGGAAC TAAAAGATTG GTTAGAATGT TCTGCCAACC AGTTTAATCA AATTGACCCA
AGCGTCAGTG CTCCACAAAA TTTGATTAAT CGCGCAGGCC ACCCAACTTA TAACTTCGAC
GTTATTGATG GCTTAACTTA CAAAATTGAT GTAACTCAAC CAACTAAGTT TGACCGAAGC
TGTGCTGTCG TTAACGCTGA TGCAAATCGT ATTGTTGACT TAGCATACAC AGCACCTGAC
GGAACGGTTA TTACGGGTGA TGAATTAGCA GCGATGTCGT TTGTTGTGGC TTCAAATAAC
TACCGTGCTT TTGGTGGTTC ATTTGCGGGT ACCGGTTCAG ACCACGTAGT GCTAGAACTG
CCAGATACCA ACCGTGATGC ATTATCAGCT TATATTACTG AGCAATCACA ACCAAATGCG
ACTGGCGGAT ATGATGCTAT GGTTGATCCA TCAGCTGATT ACAACTGGGA TTTTAAAACT
ATTGATAATG CGACTGTTGC ATTAGACATT CGTTTTGAAA CCCAAGACAG CGATGTTGCT
GACAAGTTTG TTGCTGATAA TCAACAACGT AAAATGGTGA AGTTACCTAA AACAGCTGAT
GTTGTAGCCG GCTTTGCGAT TTATAGCATC GACCTAACTA CACCTGTTGC TGCGAAGTAA
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| Protein sequence | MLNKKLLAVV IAGALGLGGC GSDNDDQTST VAADIKLRVM ETTDLHTNMM DYNYYSGKED
KTIGLVRTAS LINAARAEAT NSVLVDNGDL LQGSPMGDYI ANKFKTENNM LTDTHPVYKA
MNTLDYEVGN IGNHEFNYGL SFLEQSLGGA NFPYINANVI CADKDGCWDD VLFSENMFTP
YIIKDKVVTD VDGNEHTIKI GYIGFVPPQI LQWDRANLDG KVEVLGIVQA ANKFVPQMKA
EGADIILAIP HSGIGSSENP GDPWAENATY ALTNVDGIDA IFFGHSHSVF PSATYSDLPN
TDVDKGLLNG VPAVMPGRWG DNLGVVDLVV RQVEGKWTVI HEESTAKARP IYDNANKVAL
VEGEASLRDA IEIEHNGTIE YVSQPIGVAA ANMYSFLTLV QDDPTVQIVS NAQIARVKTL
ITDDLKDLPI LSAAAPFKAG GRYAEGDASQ YVQVDAGDLS YKNAADLYLY PNTMVAVKAT
GAELKDWLEC SANQFNQIDP SVSAPQNLIN RAGHPTYNFD VIDGLTYKID VTQPTKFDRS
CAVVNADANR IVDLAYTAPD GTVITGDELA AMSFVVASNN YRAFGGSFAG TGSDHVVLEL
PDTNRDALSA YITEQSQPNA TGGYDAMVDP SADYNWDFKT IDNATVALDI RFETQDSDVA
DKFVADNQQR KMVKLPKTAD VVAGFAIYSI DLTTPVAAK
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