Gene Sfri_2328 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_2328 
Symbol 
ID4279240 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand+ 
Start bp2771042 
End bp2771659 
Gene Length618 bp 
Protein Length205 aa 
Translation table11 
GC content46% 
IMG OID638135125 
Productlysine exporter protein LysE/YggA 
Protein accessionYP_751012 
Protein GI114563499 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1280] Putative threonine efflux protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.49697 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCAGATT ACGCTGTACT CGCTGTGTTT ATTCCAACGT TCTTTTTTGT GTCTATCACC 
CCCGGTATGT GCATGACTTT AGCCATGACA CTCGGAATGA GTATTGGTGT ACGCAGAACC 
TTATGGATGA TGTTAGGCGA ATTAGTGGGC GTGGCGTTGG TCGCCATTGC AGCAGTACTT 
GGGGTTGCCA GCATCATGCT AAATTACCCA CAGGTGTTCG ATATTCTTAA GTGGGTGGGT 
GGTGCTTACC TTGGCTACAT TGGCATTAAT ATGTGGCGTG CTAAAGGCAA AATGGCCATC 
ATCACTGGTA TTGAAGTCAA AGCCAGTCGC ATGAGCTTAA TCAGCCAAGG ATTTATTACC 
GCGATTGCCA ACCCTAAAGG TTGGGCTTTT ATGATTTCGC TATTACCGCC GTTTATTAAT 
GTTGATAATG CCGTTGGGCC ACAACTCGCC GTTTTGCTTG GTATTATAAT GGTCACCGAA 
AGTGTATCGA TGCTGGCTTA TGCCAGCGGC GGTAAGAGTT TACGATTATT TTTAAGTCGA 
GGCGATAATA TCCGCTGGAT GAATCGTATC GCCGGAAGTT TAATGATACT GGTTGGTATT 
TGGCTAGCGC TAGGCTAA
 
Protein sequence
MPDYAVLAVF IPTFFFVSIT PGMCMTLAMT LGMSIGVRRT LWMMLGELVG VALVAIAAVL 
GVASIMLNYP QVFDILKWVG GAYLGYIGIN MWRAKGKMAI ITGIEVKASR MSLISQGFIT 
AIANPKGWAF MISLLPPFIN VDNAVGPQLA VLLGIIMVTE SVSMLAYASG GKSLRLFLSR 
GDNIRWMNRI AGSLMILVGI WLALG