Gene Sfri_2327 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_2327 
Symbol 
ID4279239 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand+ 
Start bp2769898 
End bp2770938 
Gene Length1041 bp 
Protein Length346 aa 
Translation table11 
GC content40% 
IMG OID638135124 
Product4-hydroxyphenylpyruvate dioxygenase 
Protein accessionYP_751011 
Protein GI114563498 
COG category[E] Amino acid transport and metabolism
[R] General function prediction only 
COG ID[COG3185] 4-hydroxyphenylpyruvate dioxygenase and related hemolysins 
TIGRFAM ID[TIGR01263] 4-hydroxyphenylpyruvate dioxygenase 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.228554 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCAAGCG AACTAAACCC ACTGGGCCTG TTAGGCATTG AATTCACCGA ATTTGCTAGC 
CCAGATACTG AATACATGCA TCAGGTATTC ATCGATTTTG GTTTTTCGAT GTTAAAAAAA 
GCCAAAAATA ATGACATTGT TTACTACAAA CAAAATGACA TTAACTTTCT ATTGAATAAA 
GGCCGTGCAG GGTTTTCTGC AGAATTTGCC AAATCTCATG GCCCGGCTAT TTGTTCAATG 
GGTTGGCGTG TAGAAGATGC ACAGTTTGCA TTTACAGAAG CCGTTGCCCG TGGTGCAAAA 
CCAGCCGATG ATGCCAATAA AGATATGCCT TACCCAGCTA TTTACGGTAT CGGCGATAGC 
TTGATTTATT TTATTGACAC TTTTGGTGAG CAAAACAATA TTTATCAAAC TGACTTTGTT 
GATTTAGAGC AGCCTATCGT AACGCCTGAA AAAGGCTTTA TGGAAGTCGA CCATTTAACC 
AATAATGTCT ACAAAGGCAC TATGGAAAAA TGGGCTAACT TTTACAAAGA CATCTTTGGT 
TTTACTGAAG TGCGTTATTT TGATATCAGC GGCGCACAAA CCGCATTGGT ATCTTATGCC 
CTACGTTCAC CGGATGGCAG TTTCTGTATC CCGATAAACG AAGGTAAAGG CAATGATAAA 
AATCAGATTG ATGAATACTT AGGTGAATAC AATGGCCCAG GTGTTCAGCA TCTTGCATTT 
AGAAGTCGCG ACATTGTGGC CTCACTTGAT GCAATGGAAG GCACCTCAAT CAAAACACTG 
GATATTATTC CTGAATATTA CGACACTATT TTCGAGAAGT TGCCACAGGT GACCGAAGAT 
CACGATCGTA TCAAACATCA TCAAATTTTG GTTGATGGTG ATGATGAGGG TTATTTACTG 
CAAATTTTCA CCAAAAATCT TTTTGGCCCT ATCTTCATTG AAATCATTCA ACGTAAAAAC 
AACCTTGGCT TTGGTGAAGG TAACTTTACT GCGTTATTTG AATCAATCGA ACGCGATCAA 
ATGAAACGCG GCGTGCTGTA A
 
Protein sequence
MASELNPLGL LGIEFTEFAS PDTEYMHQVF IDFGFSMLKK AKNNDIVYYK QNDINFLLNK 
GRAGFSAEFA KSHGPAICSM GWRVEDAQFA FTEAVARGAK PADDANKDMP YPAIYGIGDS 
LIYFIDTFGE QNNIYQTDFV DLEQPIVTPE KGFMEVDHLT NNVYKGTMEK WANFYKDIFG 
FTEVRYFDIS GAQTALVSYA LRSPDGSFCI PINEGKGNDK NQIDEYLGEY NGPGVQHLAF 
RSRDIVASLD AMEGTSIKTL DIIPEYYDTI FEKLPQVTED HDRIKHHQIL VDGDDEGYLL 
QIFTKNLFGP IFIEIIQRKN NLGFGEGNFT ALFESIERDQ MKRGVL