Gene Sfri_2299 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_2299 
Symbol 
ID4279211 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand+ 
Start bp2744749 
End bp2745813 
Gene Length1065 bp 
Protein Length354 aa 
Translation table11 
GC content43% 
IMG OID638135096 
Productphospho-2-dehydro-3-deoxyheptonate aldolase 
Protein accessionYP_750983 
Protein GI114563470 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0722] 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase 
TIGRFAM ID[TIGR00034] phospho-2-dehydro-3-deoxyheptonate aldolase 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.720709 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACAATTA AAACAGATGA ACTCAGAACA ACCTTATTAA GCAAAGTTAT TTCTCCTGCT 
CAGTTGGCTT CAGAATATCC ATTAACGCAA AATGCTGCAG ACTACTTGGT TGCACAACGT 
CGTGAAGTAG AAGCAATTAT TGCCGGTGAA GATCAACGTT TGCTGGTCAT TATTGGCCCT 
TGCTCAATTC ATGACACTAA AGCAGCACTC GAATATGCAG AACGTTTGTC AGCCTTACAT 
CACGAACTAA AAGATGACTT GTGCATATTA ATGCGGGTGT ACTTTGAAAA GCCTCGTACC 
ATTGTCGGTT GGAAAGGCTT AATTTCAGAT CCAGATTTGG ACGGCAGCTT TAGCCCGAAT 
AAAGGCTTGC GTATGGCGCG TCAGTTATTA CAACAAATCA CTGAACTCAA GTTACCTATC 
GCCACTGAGT TTTTAGACAT GGTGAACGGC CAGTACATCG CAGACCTTAT TACCTGGGGT 
GCTATTGGCG CACGAACCAC TGAAAGCCAA ATTCACCGCG AAATGGCTTC TGCATTGTCT 
TGCCCTGTTG GCTTTAAAAA TGGTACTGAC GGTAACATTA ATATTGCTGT TGATGCAGTA 
CGTGCAGCTC AAGCTCCGCA TATTTTTTAC TCTCCAGATA AAGATGGCGC AATGGCGGTT 
TACCGTACCC ACGGCAACCC ATTTGGACAC ATTATTTTGC GTGGTGGTAA AACGCCAAAT 
TATTCAGCTG AAGATATTGA AGTCGCACGC GCACAACTTG AAAATGTGGG TGTAACTCAG 
CGTATGGTGG TTGATTTCAG CCATGGTAAC AGTGAGAAAC AACATAGAAA CCAGCTTAAT 
GTAGCCAATA GTATTATGGC GCAGCTGCGC AGTGGTAGTA CAGCAATTGC CGGTATTATG 
GCAGAGAGCT TTATGATTGA AGGTAATCAG AAAGTGGTTA AAGACGAACC ATTAGTGTAT 
GGCCAAAGTA TTACTGATGC ATGTTTGCAT TGGGCTGATT CTGAGAAGCT GTTACGTGAT 
TTAGCTCAAG CTTCGAAAGA ACGCAAAGCA TTGCTAGCAC AGTAA
 
Protein sequence
MTIKTDELRT TLLSKVISPA QLASEYPLTQ NAADYLVAQR REVEAIIAGE DQRLLVIIGP 
CSIHDTKAAL EYAERLSALH HELKDDLCIL MRVYFEKPRT IVGWKGLISD PDLDGSFSPN 
KGLRMARQLL QQITELKLPI ATEFLDMVNG QYIADLITWG AIGARTTESQ IHREMASALS 
CPVGFKNGTD GNINIAVDAV RAAQAPHIFY SPDKDGAMAV YRTHGNPFGH IILRGGKTPN 
YSAEDIEVAR AQLENVGVTQ RMVVDFSHGN SEKQHRNQLN VANSIMAQLR SGSTAIAGIM 
AESFMIEGNQ KVVKDEPLVY GQSITDACLH WADSEKLLRD LAQASKERKA LLAQ