Gene Sfri_2270 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_2270 
Symbol 
ID4279182 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand- 
Start bp2716611 
End bp2717717 
Gene Length1107 bp 
Protein Length368 aa 
Translation table11 
GC content41% 
IMG OID638135067 
ProductTonB family protein 
Protein accessionYP_750954 
Protein GI114563441 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0810] Periplasmic protein TonB, links inner and outer membranes 
TIGRFAM ID[TIGR01352] TonB family C-terminal domain 


Plasmid Coverage information

Num covering plasmid clones9 
Plasmid unclonability p-value0.00628561 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGACAC TTTTACGCTT ATCGATAGCG GCGGCTTTTG TTAGCCACGT AGCTTATGCT 
GAACCAACCG ATGTAGAGGA TTTTTCACAA GCTTATCAAC AGTACAATGC TTCTGTTGAA 
AGTAATAACA ACCAAGATAC GCTGAAATAT GCGCAGCAAG CCTATGAGTT AGGTCAAATT 
AAATTCGGTC AAGACAGCTT TGATAGCGCT AAGTTAGCCA TCAATTATGC AAATGCGGTA 
ATGGTTGAAC CTAAGAAAAA GAATCAAGGC CGTGTTATTG AAGATGAAGC CACGCTTAAG 
GCGCATCAAT TATTTACTTC TGCATTAGCT GTATACCGTG AAAACGTGAC CGATAATGGT 
ATCGAGTTAA TCGATCCTTT GATTGGGTTA GCTGAATCGA CAACAGATGA TAAATACGCG 
AAAACGTTAT TATTTGAAGC AATAGAGATC GCAGAAAAAG CTGACAATGA GTTAACGGTT 
GCAGAAGTAA AACTCATTAC GTTTCACCGA TTATCGCGCA CCGAGTATTA TACCCGCACA 
GTGAGAACTT TGGCGTTTGA CGCTTACGAT ATTTATACCA GTAAGTTGCC AGAGGATGCC 
ATTAAACGAG TTGATGCTAC TTATCTAGTG GGTGCGTTAT ATGAGACTAT GGGTAAGCCA 
ACTCAAGCTA TTACGAATTT AGTTGAAGTT ATCAAACAAT ATCGGGCATT ACCTTATAGC 
CATCCGTATG AGCTTCGTGC GCATGCCTTG TTAGTGAAAC TGTATGAGCA AAAAGGCCTA 
GGCGATAAAG CCACTGAGCA TTGCATTGCG ATTGGTAAAA TGACGCCATG GAGTGACCAA 
CAAGAACAAA CCCCGTTATT TAGAAAACCA CCAAAATACC CGCAATCATA TGCTCAAAGA 
AGAAAATCTG GTTGGGTGCA AGTTGAGTTT ACGGTAGATG AAAATGGTTT TGTTAAATCA 
CCTGAGATCA TTGACTCTAA AGGTGGCACC CAGTTTGAAA AAGAATCGAT AGAAGCGCTC 
AGTCAATGGC GTTATGCACC TAAATTTGTT GATGGTAAGC CAACAGAAGC AAAGTCTACC 
GTTCAGCTTG ATTTCACCAT AGGTTAA
 
Protein sequence
MKTLLRLSIA AAFVSHVAYA EPTDVEDFSQ AYQQYNASVE SNNNQDTLKY AQQAYELGQI 
KFGQDSFDSA KLAINYANAV MVEPKKKNQG RVIEDEATLK AHQLFTSALA VYRENVTDNG 
IELIDPLIGL AESTTDDKYA KTLLFEAIEI AEKADNELTV AEVKLITFHR LSRTEYYTRT 
VRTLAFDAYD IYTSKLPEDA IKRVDATYLV GALYETMGKP TQAITNLVEV IKQYRALPYS 
HPYELRAHAL LVKLYEQKGL GDKATEHCIA IGKMTPWSDQ QEQTPLFRKP PKYPQSYAQR 
RKSGWVQVEF TVDENGFVKS PEIIDSKGGT QFEKESIEAL SQWRYAPKFV DGKPTEAKST 
VQLDFTIG