Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_2260 |
Symbol | mnmA |
ID | 4279172 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 2706082 |
End bp | 2707200 |
Gene Length | 1119 bp |
Protein Length | 372 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 638135057 |
Product | tRNA-specific 2-thiouridylase MnmA |
Protein accession | YP_750944 |
Protein GI | 114563431 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0482] Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain |
TIGRFAM ID | [TIGR00420] tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACATCAC TCAACCCTAC TTCAAACGGT AAAAAAGTCA TTGTCGGCAT GTCCGGCGGT GTGGACTCTT CAGTATCAGC TTACTTGTTA ATGCAGCAAG GCTTCGAAGT TGAAGGTCTA TTTATGAAGA ACTGGGAAGA AGACGATACT GATGAATATT GCGCTGCAGC AGATGATTTA AAAGATGCTC AAGCGGTTTG CGACAAGCTA GGTATAAAAA TGCACACCGT CAATTTTGCT GCCGAATACT GGGATAACGT ATTCGAATAT TTTTTAGCAG AATACAAGGC CGGTCGAACG CCCAACCCCG ATATCATGTG TAATAAAGAA ATCAAATTTA AAGCATTTCT TGAATTTGCC GACGACATTT TAGACGCCGA TTATATCGCC ATGGGCCATT ATGTTCGTCG TCGTGATAAT AGCGATGGCA GCGTTGAAAT GCTCCGCGGG GTTGATGGCA ATAAAGATCA AAGTTACTTC TTATACACGT TAAGCCACGA ACAAGTTGCC CGTAGTTTGT TCCCTGTCGG TGAACTTGAA AAACATCAAG TACGCGAAAT AGCCCAAAAA TTGGGACTCA TTACTCACGA CAAAAAAGAC AGCACTGGCA TCTGTTTTAT TGGTGAACGT AAGTTTACTG ACTTCTTAGC AACTTATTTA CCTGCTCAGC CTGGTGATAT CGAAACATCG GAAGGTGAAG TGATTGGTAC ACATCAAGGG TTGATGTATC ACACACTTGG ACAACGCAAA GGCCTTGGCA TTGGTGGACT GAAAAACAGC AATGAAGACC CATGGTATGT GGTCGAAAAA GATTTAGTCC GTAATGTGCT TATTGTGGCG CAAGGCGGCA ATCACCCTCG CCTAATGTCA ACAGGTATGA CCGTCAATCA GCTCCATTGG GTTGATCGTA CGGGGCCAGC CAATAACAGC ACGATTACAG TAAAGACCCG TTATCGTCAA CGTGATGTTG GATGTACCCT CACCTATGAC GACGCAGACA ATATTACGGT GATGTTTGAT GAACCTGTTG CTGCTGTTAC GCCTGGGCAA TCAGCGGTGT TTTATGATGG TGACATCTGT TTAGGTGGCG GCATAATCGA TACTTTAATT CGAGGGTAA
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Protein sequence | MTSLNPTSNG KKVIVGMSGG VDSSVSAYLL MQQGFEVEGL FMKNWEEDDT DEYCAAADDL KDAQAVCDKL GIKMHTVNFA AEYWDNVFEY FLAEYKAGRT PNPDIMCNKE IKFKAFLEFA DDILDADYIA MGHYVRRRDN SDGSVEMLRG VDGNKDQSYF LYTLSHEQVA RSLFPVGELE KHQVREIAQK LGLITHDKKD STGICFIGER KFTDFLATYL PAQPGDIETS EGEVIGTHQG LMYHTLGQRK GLGIGGLKNS NEDPWYVVEK DLVRNVLIVA QGGNHPRLMS TGMTVNQLHW VDRTGPANNS TITVKTRYRQ RDVGCTLTYD DADNITVMFD EPVAAVTPGQ SAVFYDGDIC LGGGIIDTLI RG
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