| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2254 |
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| Symbol | |
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| ID | 4279166 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 2698834 |
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| End bp | 2701092 |
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| Gene Length | 2259 bp |
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| Protein Length | 752 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638135051 |
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| Product | ATP-dependent Clp protease, ATP-binding subunit clpA |
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| Protein accession | YP_750938 |
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| Protein GI | 114563425 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0542] ATPases with chaperone activity, ATP-binding subunit |
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| TIGRFAM ID | [TIGR02639] ATP-dependent Clp protease ATP-binding subunit clpA |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00769581 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTGAACA AAGACCTGGA AGTCACCTTG AACCTAGCGT TTCAGCAAGC TAGAGATTCA
CGTCATGAAT ACATGACGGT AGAACATTTA TTATTAGCGC TGATTGATAA TCCTTCGGCC
TATGAAGCAT TAATTGCTTG TGGGGCGGAT GTTAATCGTT TACGAGAAGA AGTGGCTAAT
TTCATTCAAC AAACCACGCC CATTATTGCA GAATCAACCG AAGAACGTGA AACCCAACCC
ACCTTGGGAT TTCAACGTGT TTTGCAACGA GCCGTGTTCC ATGTGCAATC ATCTGGTCGT
AACGAAGTTT CTGGTGCCAA TGTACTCGTT GCTATTTTTA GTGAACAAGA GTCGCAAGCG
GTATATTTAC TGCGTCGTTG TGATATTACC CGTTTAGATG TGGTTAATTT TATTTCTCAT
GGCATGTCAA AAGAAGATGA TTCTGGCGAA CCACAAGATC AAGAGCGCAT TGACGATCAA
TCTGAAAATG CCGAAGACCG CAGCATGTTG GCGCAGTTTG CTGCCAATTT AAACCAATTA
GCCCAAGACG GCAGTATCGA CCCATTAATT GGTCGTGATG CTGAAATTGA GCGCGCAATT
CAAACTTTGT GTCGTCGACG TAAGAATAAC CCATTACTTG TGGGTGAAGC TGGCGTGGGG
AAAACGGCTA TCGCAGAAGG TTTGGCTTAT CGTATCGTCA ATAAGCAAGT ACCTGATGTT
ATGGCCAACG CGACGGTGTA TTCGTTAGAC TTAGGCTCAT TATTAGCGGG CACTAAATAC
CGTGGTGATT TTGAAAAGCG TTTTAAAAGC TTATTAAAAG AACTCGCAGC TGATGAGCAT
GCCATTTTAT TTATTGATGA AATTCATACC ATTATTGGTG CTGGTGCCGC TTCTGGCGGT
GTGATGGATG CATCTAACTT GCTTAAGCCA TTGCTATCGA GTGGTAAGTT ACGTTGCATG
GGGTCAACCA CGTTCCAAGA ATATCAAAGC ATTTTTGAGA AAGACCGTGC TTTAGCGCGT
CGCTTCCAAA AAATTGATAT TAATGAGCCT TCAGTTGCCG AAACCACCAA AATTTTAATG
GGGCTTAAAT CTAAGTACGA AGAATACCAT GGGGTGCGTT ATACCCAAGC TGCCATCAGC
AGTGCAGCTA GCCTTTCGGC AAAACACATT AATGATCGCC ATTTACCTGA CAAAGCGATT
GATGTGATTG ATGAAGCGGG CGCTCGAATG GTGATGATGC CGCAAAGTAA ACGCAAGAAA
ACCATTGGCC AAGCTGAAAT TGAAGCAATC ATTGCTAAAT TGGCTCGTAT CCCTGAGAAG
TCGGTATCGT CGACTGACAA GGATATGTTA CGCAACCTTG AACGCAACCT CAAGATGGTG
GTGTTTGGGC AGGACAAGGC GATTGAGAGC CTTAGCGCGG CTATACGCTT GTCTCGCAGT
GGTTTAGGTT CAGAAAAGAA ACCTGTTGGT AGCTTTATGT TTGCTGGCCC AACTGGGGTA
GGTAAAACCG AAGTAACCAA TCAATTGGCT AATTGTCTCA ACCTCAAACT CATTCGCTTT
GATATGTCTG AGTATATGGA GCGTCACACC GTATCGCGTT TAATCGGTGC TCCTCCAGGT
TATGTGGGTT ATGACCAAGG TGGTTTGCTT ACCGATGCCG TGATTAAAAA CCCACATTGT
GTGGTGCTAC TTGATGAAAT TGAAAAGGCG CACCCAGATG TATTCAACTT GCTATTGCAA
GTTATGGATC ACGGTACATT GACCGACAAT AACGGCCGAA AAGCTGATTT TAGAAATGTA
ACCTTGGTGA TGACAACCAA CGCTGGCGTA CAAGAAACAA TCCGTAAATC GATTGGTTTT
AGACAGCAAG ATCACACTCA AGATGCCTTA GCTGAAATTA ATAAAGTCTT TTCACCTGAG
TTCCGCAATC GATTGGATTC GATCGTATGG TTTAATCATT TGGATATGAC CGTTATCGCC
AAAGTGGTTG ATAAGTTCTT AGTTGAATTA CAGGCACAAC TTGATGATAA ACATGTCACG
CTGGATGTCA GTGATGAAGC ACGAACCTTG CTTGCAGAGA AAGGCTATGA CAAATCGATG
GGCGCGCGCC CAATGTCACG TGTTGTCACG GAATTGATTA AACGTCCGTT AGCAGATGAG
ATTCTGTTTG GTGTGCTTGA ACGAGGAGGT ATTGCGCATA TTGACGTTAA AGAAGGTGAG
ATCAATATTG ATTGCGAGTC GTTAGAAAAA GTCTCGTAA
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| Protein sequence | MLNKDLEVTL NLAFQQARDS RHEYMTVEHL LLALIDNPSA YEALIACGAD VNRLREEVAN
FIQQTTPIIA ESTEERETQP TLGFQRVLQR AVFHVQSSGR NEVSGANVLV AIFSEQESQA
VYLLRRCDIT RLDVVNFISH GMSKEDDSGE PQDQERIDDQ SENAEDRSML AQFAANLNQL
AQDGSIDPLI GRDAEIERAI QTLCRRRKNN PLLVGEAGVG KTAIAEGLAY RIVNKQVPDV
MANATVYSLD LGSLLAGTKY RGDFEKRFKS LLKELAADEH AILFIDEIHT IIGAGAASGG
VMDASNLLKP LLSSGKLRCM GSTTFQEYQS IFEKDRALAR RFQKIDINEP SVAETTKILM
GLKSKYEEYH GVRYTQAAIS SAASLSAKHI NDRHLPDKAI DVIDEAGARM VMMPQSKRKK
TIGQAEIEAI IAKLARIPEK SVSSTDKDML RNLERNLKMV VFGQDKAIES LSAAIRLSRS
GLGSEKKPVG SFMFAGPTGV GKTEVTNQLA NCLNLKLIRF DMSEYMERHT VSRLIGAPPG
YVGYDQGGLL TDAVIKNPHC VVLLDEIEKA HPDVFNLLLQ VMDHGTLTDN NGRKADFRNV
TLVMTTNAGV QETIRKSIGF RQQDHTQDAL AEINKVFSPE FRNRLDSIVW FNHLDMTVIA
KVVDKFLVEL QAQLDDKHVT LDVSDEARTL LAEKGYDKSM GARPMSRVVT ELIKRPLADE
ILFGVLERGG IAHIDVKEGE INIDCESLEK VS
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