Gene Sfri_2208 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_2208 
Symbol 
ID4279120 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp2641216 
End bp2642769 
Gene Length1554 bp 
Protein Length517 aa 
Translation table11 
GC content41% 
IMG OID638135005 
Productlytic transglycosylase, catalytic 
Protein accessionYP_750892 
Protein GI114563379 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG4623] Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.738412 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAGCAA ACTTGATTAT TATAGCTGGC AGTATGCTGG CTATAACGGG GTGCCAGACA 
CTCCATACTG CAGAGCCAAG TTCTGATAGT ACAACCCAGA CTGTTACAGC TAACGCTAAA
AACAAAAAAT CAGCGACCGT AACTCTTGAG CAAATTGAAG AACAAGTTGC TCAAGTTAAC
GATTTATGGC TCAGGATCAG CAACCAAATG CACTTTCCTG TTGTCGATAA TGCTTTGGTT
GCTCAGTACC GCCAATGGTA CATCGATAAT CCTATGCATT TAGAAATCGT CACTCAACGT
GCTCAGCCAT ATCTGTATTA CATTGTTGAA CAGTTAAAAA AACGCAATTT ACCTTTAGAG
CTAGCATTGC TGCCTATTGT TGAAAGTGGT TTTGACCCAC TAGCCCATTC ACCAAGTGAT
GCATCGGGTT TATGGCAATT AACCTCACCA ACGGCCATGT CGTTTGGCGT AAAGACAAAT
TGGTGGTATG ACGGACGCCG TGATGTTGCC TCATCGACAA AAGCAGCTTT AGATTTAATG
GAATACCTTT ACGCCAAAAT GGATCACAAT TGGTTATATA CCATTGCCGC TTATAACTCT
GGTGAAGGTC GAATATTCAA TGCCATAAAA CATAACCAAG CCCGCGGAAA ATCGACAGAT
TTCTGGTCAT TATCGCTGCC AAGAGAAACC GCTCACTATG TCCCCCAGTT ATTAGCATTG
GCAGATGTCA TTAAACATGC AGATAAGTAC GGCATCAATT TAACGCCTAT AGATAACTCG
CCTCAAATAG AGGTAGTCGA TATTGAAAGC CAACTCGACA TTAATTTAGC GGCTGATTTG
GCTCAAATTG ACATAAATGA TTTAAAAGCG ATTAATCCAG GTTTAAAGCG CTGGGCAACA
GCCCCACAAG GTCCACATCA ATTGATTGTG CCTAGTGATA AAGCGGTATC CTTTAAACGA
GCATTAGCCA CTATTGAACC AAACTCCCGT ATTAACTGGG TTCGTTATAA AATTAAGTCT
GGTGATAGCA TCAGTGAAAT TGCCGACCAA TTTGAAACCA CGGCTACATT AATAAGAAGC
AGTAACGGTA TTAAAGGCAA TAATATTATT GCTGGTCGAT TTTTAATTAT TCCTGTTGCG
GCAAAAGATC CAGATTTAGC CACCATGACC GCAGACCAAG TACTGGCACG CAAAACGGTG
GTCAAATCAA GCCCAAACAA GCAAGCTTAT ATCATTAAAT CTGGTGATTC ATTATGGAAG
ATAGCGCAGT CACAGCAAGT GACTGTCGCA CAATTAATGA AATGGAATAA TCTTAAAAAA
CAATCCACGT TAGCCATCGG TAAATCATTA GTTATTTTTC CTAATGAAGT CGCCATTAAC
ACTGCAAGCA ATGATAAAAC GGTTAGCTAT CGCGTCCAAT CAGGTGACTC TTTAGCGCGT
ATAGCACTTA AATATAAGGT TACCGTTGCA GAGTTAATCG AATGGAACAG TTTACAAAAT
AGTAAATTGA TCCAACCTGG ACAGATACTG AAACTGATTG TGACCAATAG CTAG
 
Protein sequence
MKANLIIIAG SMLAITGCQT LHTAEPSSDS TTQTVTANAK NKKSATVTLE QIEEQVAQVN 
DLWLRISNQM HFPVVDNALV AQYRQWYIDN PMHLEIVTQR AQPYLYYIVE QLKKRNLPLE
LALLPIVESG FDPLAHSPSD ASGLWQLTSP TAMSFGVKTN WWYDGRRDVA SSTKAALDLM
EYLYAKMDHN WLYTIAAYNS GEGRIFNAIK HNQARGKSTD FWSLSLPRET AHYVPQLLAL
ADVIKHADKY GINLTPIDNS PQIEVVDIES QLDINLAADL AQIDINDLKA INPGLKRWAT
APQGPHQLIV PSDKAVSFKR ALATIEPNSR INWVRYKIKS GDSISEIADQ FETTATLIRS
SNGIKGNNII AGRFLIIPVA AKDPDLATMT ADQVLARKTV VKSSPNKQAY IIKSGDSLWK
IAQSQQVTVA QLMKWNNLKK QSTLAIGKSL VIFPNEVAIN TASNDKTVSY RVQSGDSLAR
IALKYKVTVA ELIEWNSLQN SKLIQPGQIL KLIVTNS