Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_2208 |
Symbol | |
ID | 4279120 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 2641216 |
End bp | 2642769 |
Gene Length | 1554 bp |
Protein Length | 517 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 638135005 |
Product | lytic transglycosylase, catalytic |
Protein accession | YP_750892 |
Protein GI | 114563379 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG4623] Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.738412 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAGCAA ACTTGATTAT TATAGCTGGC AGTATGCTGG CTATAACGGG GTGCCAGACA CTCCATACTG CAGAGCCAAG TTCTGATAGT ACAACCCAGA CTGTTACAGC TAACGCTAAA AACAAAAAAT CAGCGACCGT AACTCTTGAG CAAATTGAAG AACAAGTTGC TCAAGTTAAC GATTTATGGC TCAGGATCAG CAACCAAATG CACTTTCCTG TTGTCGATAA TGCTTTGGTT GCTCAGTACC GCCAATGGTA CATCGATAAT CCTATGCATT TAGAAATCGT CACTCAACGT GCTCAGCCAT ATCTGTATTA CATTGTTGAA CAGTTAAAAA AACGCAATTT ACCTTTAGAG CTAGCATTGC TGCCTATTGT TGAAAGTGGT TTTGACCCAC TAGCCCATTC ACCAAGTGAT GCATCGGGTT TATGGCAATT AACCTCACCA ACGGCCATGT CGTTTGGCGT AAAGACAAAT TGGTGGTATG ACGGACGCCG TGATGTTGCC TCATCGACAA AAGCAGCTTT AGATTTAATG GAATACCTTT ACGCCAAAAT GGATCACAAT TGGTTATATA CCATTGCCGC TTATAACTCT GGTGAAGGTC GAATATTCAA TGCCATAAAA CATAACCAAG CCCGCGGAAA ATCGACAGAT TTCTGGTCAT TATCGCTGCC AAGAGAAACC GCTCACTATG TCCCCCAGTT ATTAGCATTG GCAGATGTCA TTAAACATGC AGATAAGTAC GGCATCAATT TAACGCCTAT AGATAACTCG CCTCAAATAG AGGTAGTCGA TATTGAAAGC CAACTCGACA TTAATTTAGC GGCTGATTTG GCTCAAATTG ACATAAATGA TTTAAAAGCG ATTAATCCAG GTTTAAAGCG CTGGGCAACA GCCCCACAAG GTCCACATCA ATTGATTGTG CCTAGTGATA AAGCGGTATC CTTTAAACGA GCATTAGCCA CTATTGAACC AAACTCCCGT ATTAACTGGG TTCGTTATAA AATTAAGTCT GGTGATAGCA TCAGTGAAAT TGCCGACCAA TTTGAAACCA CGGCTACATT AATAAGAAGC AGTAACGGTA TTAAAGGCAA TAATATTATT GCTGGTCGAT TTTTAATTAT TCCTGTTGCG GCAAAAGATC CAGATTTAGC CACCATGACC GCAGACCAAG TACTGGCACG CAAAACGGTG GTCAAATCAA GCCCAAACAA GCAAGCTTAT ATCATTAAAT CTGGTGATTC ATTATGGAAG ATAGCGCAGT CACAGCAAGT GACTGTCGCA CAATTAATGA AATGGAATAA TCTTAAAAAA CAATCCACGT TAGCCATCGG TAAATCATTA GTTATTTTTC CTAATGAAGT CGCCATTAAC ACTGCAAGCA ATGATAAAAC GGTTAGCTAT CGCGTCCAAT CAGGTGACTC TTTAGCGCGT ATAGCACTTA AATATAAGGT TACCGTTGCA GAGTTAATCG AATGGAACAG TTTACAAAAT AGTAAATTGA TCCAACCTGG ACAGATACTG AAACTGATTG TGACCAATAG CTAG
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Protein sequence | MKANLIIIAG SMLAITGCQT LHTAEPSSDS TTQTVTANAK NKKSATVTLE QIEEQVAQVN DLWLRISNQM HFPVVDNALV AQYRQWYIDN PMHLEIVTQR AQPYLYYIVE QLKKRNLPLE LALLPIVESG FDPLAHSPSD ASGLWQLTSP TAMSFGVKTN WWYDGRRDVA SSTKAALDLM EYLYAKMDHN WLYTIAAYNS GEGRIFNAIK HNQARGKSTD FWSLSLPRET AHYVPQLLAL ADVIKHADKY GINLTPIDNS PQIEVVDIES QLDINLAADL AQIDINDLKA INPGLKRWAT APQGPHQLIV PSDKAVSFKR ALATIEPNSR INWVRYKIKS GDSISEIADQ FETTATLIRS SNGIKGNNII AGRFLIIPVA AKDPDLATMT ADQVLARKTV VKSSPNKQAY IIKSGDSLWK IAQSQQVTVA QLMKWNNLKK QSTLAIGKSL VIFPNEVAIN TASNDKTVSY RVQSGDSLAR IALKYKVTVA ELIEWNSLQN SKLIQPGQIL KLIVTNS
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