| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2200 |
|---|
| Symbol | |
|---|
| ID | 4279112 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 2628994 |
|---|
| End bp | 2630673 |
|---|
| Gene Length | 1680 bp |
|---|
| Protein Length | 559 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 638134995 |
|---|
| Product | thiamine-phosphate pyrophosphorylase |
|---|
| Protein accession | YP_750884 |
|---|
| Protein GI | 114563371 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0351] Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase
[COG0352] Thiamine monophosphate synthase |
|---|
| TIGRFAM ID | [TIGR00097] phosphomethylpyrimidine kinase
[TIGR00693] thiamine-phosphate pyrophosphorylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATTCAT CGACATTTGT CAGTGAATCC ATAACTCAAA CCCCACCCAT TGTCTGGACC
ATAGCGGGTT CAGACAGTGG TGGTGGTGCG GGGATTCAAG CTGATTTATT AACTATGCAA
GACTTGTCGT GTCACGGGTG TAGCGTAATA ACCACAGTAA CTGCGCAAAA CTCAGTCAGT
GTGAGTCTTG TAGAAACCGT TTCTGAATCC ATGTTGTTGG CTCAGTTCAG TAGTTTACTC
GTGGATTTGC CGCCAGTGGC GATTAAAATT GGCCTGCTTG CATCCCAAGC ACAGGTCGAC
ATATTGGCTG ACTGTTTGAC TCAGATGCGC GCTACTCAGA AGATAGTACC TTTTGTGGTG
CTTGATCCCG TCATGGTCGC CAGTAGTGGT GCTAATTTTA ATTCTATCGA TCTCGATTTT
AGCCCTCTCA TTGGTTTAAT TGATTTACTA ACGCCTAATC AGCACGAATT GAAGCGCTTA
TGTTCTCAGT ATGCGTTAGC GCAATATTGT GATGTCGATA ACAAGGTTGC TCAGCAACAG
CAAATGATCT GCGATGCCAA ATTGTTATCC GATACATTTA AATGCAATGT GCTCGCTAAA
GGCGGTGATG CTCAGTGGCA GCAACAATAT GCAATAGATG TATATGTGAG TAAAAACGTT
AAAGGTGCCA GTATTACACA CAGTAATGCG GTGTTTATGC TAAGTAGCCA GCGGATAGCA
ACCACCAATA ATCATGGCAG TGGTTGCACA TTATCATCTG CAATAGCGTG TTTTATTGCC
CATGAGTTCG TGATTCATGA TGCTATTGTG CTGGCAAAAG CCTACGTCAA TAAGGGACTC
ACTTTAGGTG TAAGTCTCGG GCAAGGACCT GGTGTATTAG CCCGTACTGG TTGGCCTGCT
GATTTAGGAA TGATGCCATC AATCAATTTA GTATCCTCTG ACTATCGCGC TCAAGATCGG
TTTAAGCCAG CTCCACTGAA TAGTTTTAAA GCGGTGCATC AATCCTTGGG GATTTATCCT
GTTTTAGATG ATCTTGGAAT ATTAAAAAAT GTATTAAAAG CGGGCTGCAA GACGGTCCAA
TATCGTGCCA AGTTAGCGAC TAATACCGAT GCCGATACCG ATACCGATAA TCGGCAACGA
TTAACACTCG AAGCGAATAT CATTGAGGCC ATCAAACTCG GTCGCGAATA TCATGCTCAG
TTGTTTATTA ATGATCATTG GCAACTGGCG ATTAAACACG GTGCTTTTGG GGTTCATTTA
GGCCAAGAGG ATTTGCTCAT TGCAGATTTA ACCGCGATAG CGGCAACAGG AATGGCGTTA
GGGTTATCGA GTCACAGTTA TTTTGAAGCC TTGTTAGCCC ACCAATGTTC GCCTTCATAT
ATTGCTCTTG GGCATATTTT TGCTACCACG ACCAAGCAAA TGCCTTCCGC GCCTCAAGGG
CTCAGCAAAC TTAAACGTTA TGCCAGTTTA TTTGCGCGCC ATTATCCGAC AGTCGCAATT
GGCGGGATAA ATCTCAATAA CCTTGAGCAG ATTGCTGAAA CCGGCGTTGG TGATGCTGCT
GTTGTTAGAG CGGTAACTAT GGCTGACGAT CCTGCAAAAG CGTATCGAGC CTTGCATCAT
AAATGGTTGC AGCTTACGCG GCCTTTAGCA AAAGCCTGTT CACCTCAGGA GGGAGTATGA
|
|---|
| Protein sequence | MNSSTFVSES ITQTPPIVWT IAGSDSGGGA GIQADLLTMQ DLSCHGCSVI TTVTAQNSVS
VSLVETVSES MLLAQFSSLL VDLPPVAIKI GLLASQAQVD ILADCLTQMR ATQKIVPFVV
LDPVMVASSG ANFNSIDLDF SPLIGLIDLL TPNQHELKRL CSQYALAQYC DVDNKVAQQQ
QMICDAKLLS DTFKCNVLAK GGDAQWQQQY AIDVYVSKNV KGASITHSNA VFMLSSQRIA
TTNNHGSGCT LSSAIACFIA HEFVIHDAIV LAKAYVNKGL TLGVSLGQGP GVLARTGWPA
DLGMMPSINL VSSDYRAQDR FKPAPLNSFK AVHQSLGIYP VLDDLGILKN VLKAGCKTVQ
YRAKLATNTD ADTDTDNRQR LTLEANIIEA IKLGREYHAQ LFINDHWQLA IKHGAFGVHL
GQEDLLIADL TAIAATGMAL GLSSHSYFEA LLAHQCSPSY IALGHIFATT TKQMPSAPQG
LSKLKRYASL FARHYPTVAI GGINLNNLEQ IAETGVGDAA VVRAVTMADD PAKAYRALHH
KWLQLTRPLA KACSPQEGV
|
|---|
| |