| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2185 |
|---|
| Symbol | |
|---|
| ID | 4279097 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 2611755 |
|---|
| End bp | 2614580 |
|---|
| Gene Length | 2826 bp |
|---|
| Protein Length | 941 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 638134980 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_750869 |
|---|
| Protein GI | 114563356 |
|---|
| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain
[COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.260855 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAAATTTA TACCTTGGAT ATTAGCAATG TTATTTGCGT GGATATCATT ACCCGCGCAG
GCAATACATT CAGATAAAAC CGAACTGTCA GTAGATCATT TACCCTTAGT CATCGTGATG
GGTGAAGATA CTTATCCATT TGAATATTTG GATGAGAAGG GCACTCCAGC AGGGATTTTG
GTCGATTTAT GGCGCGAGTG GTCCATCATT ACTGATACCA AGGTACAATT TGTGTCTCGG
CATTGGCAAC AGTCACTTGA TCAGCTGGAA CAGAAAAAAG CTGACATACA TATTGGTATG
TCTCAAAACC AAGCACGGTT AAAAAAGTTC GATTTTGCAA AACCATTTAC TTCCTTAAAT
ACCTATTTAT ACATTCATAA GTCGCTGAGT AGTAAAAAAC AAATTAGCGA TTTGGTTCCC
TATCAAGTCG GTATCGTCAG TGGATCATCC CATGAAGCAA CATTATTAGC GCTAGAACCT
AAGCTTAGTT TTAAGCGTTA TCAAAATCGT GAACAATTAT TACAAGCCGC CGTAAAAGGT
GAGTTATTTG TTTTTGCCGG TATTGAAGGA TACCAGCGCA ATTTGGCGCT TGAACAAGAC
ATAGCCGCAA ACTTTTACAG TTCATCGCGT ATTCTCATCA AAAAAATCAA CCTAGCCCCA
GCGGTGGTAA AAGGGGATTT GGATCTTCTC AACAAGATTA ACCAGGGTTT TGAATTAATA
CCTGCAAAAG TTATTCAGCA AATAGAGCGG CGGTGGTTAG GTTATCATCG ACAAACTACA
GGGGTGATTA TCGCGATGCA AAACGGTGTC GAACCTTATG CGGATATCGG TGCTGATGGA
TTACCACATG GAATGTTGGT GGATTTGTGG ACTTTATGGT CTGAAAAAAC CGGTATCAAT
ATTGATTTTG TCGCTGGTGA CATGAGTAGT ACAATTGATG ATGTTAAACG TGGTGTCGCA
GATGTTCATA TTGGTTACCC TGAAAGCCAA GATATGCGCA CAGGTTTGAA ACAAGCGTGG
CATATTATTT CGGTTAAAAG CCGTTTTTTT AGCTCAAACT TAACATTAAA TAACATTGAA
GACATTGTGA TGCGGATTGG CGTTTATCCT ACAGCGCCTT ATATCAGTGA TATTAAAAAA
GCTTTTCCTA AGGCGCAATT ACGCTTTTAT GATTCATTAG ATGCCATGGT TAAAGCCGCA
CGTAACGATG AAATCAGCGG TTTTGTTTCA TCTGCAGCAA TGACGTCTCA TTATTTATTG
GCTAATAAGT TGTGGGCAGA ATTTCGTCAA TATACTGATA TCGAATTTTC GACAGATATG
TATGTATTAA CCCGTATTGA CGACAGTGGT TTAGCCGATC GGATTCAAGC TGGATTTAAT
TTAATTTCTG TTGAAGAACA AGTTCAGGTT GAGCGTAAAT GGTTAATTAA TCCAGATGAC
CGCTTTTTTG CGAATTCTGC CAATAAAATA AAATTAACAA CACAACAAAA GCAATATGTT
AGTAGTTTAG GCGCCATTAA AATGGGTTAC CTGAAAAATT GGGCCCCTAT GGAATTCCAG
GGCAAAAATG GTGAGTTTTT AGGGGTGAAT GCAGACATTA AAAACTTACT AGTCAAGCAA
CTCAATTTAA CTATTATCCC AGTGGCTTAC GATGATTTTG GTAACATGAT GAATGACCTA
ATTAAAGGTG AAATTCATTT AGTGGCCAGT ATGGCTAAAA CGGTTGAGCG CGAAAACAAA
CTAGCATTCT CTTTAGCATA TTGGCCATCA CCTTGGGCGA TAGTCACGTC GCTAAGCCAA
CCTCCCATTT TTAATATTTC ACAGGTAACA GGTAAACGTC TGGCTGTTGT TGACGGTTAC
CATATTGTCG ATCAGCTTCG CCAACAATAC CCAGGTATAA AATTAGTGCC CGTTGCAGAC
ACTAAACAAG GTATGGAAGC CGTTATCACA GGTAGCGCGG ATATGTTTGT TGAACAAGTT
GCAACATTGG CGACTACGTT AAAAGGTGGC CAATATCCGA GTTTGAAAAT GTCTTTATTA
GCTGAGTTAA CCGAGCAGCA CAGCCACATA GGGTTATTCC CAGGCGTGAA AAATTTAGTG
CCTTTGATTG ATAGAGTCAT TGCGACTATC GATGAAACCG AACAACAGAA CATGTACCAA
AAATGGGTCT CGCTAGATCT TAATAGTGAC ACATTACGCT ATCAACGGTG GTTGAAAATA
TTAGTGATTG GTTTGTTAAT TATCACCCTA ATAGCCATTG TAATATTAAT GTCGAATCGG
CGCCTAAATG TCGAAATTCA AAAACGGCTT AAAGCTGAAG AAAATCTTCG ATTTATGGCC
AATCATGATA ATTTAACCGC ATTGCCAAAT CGCAGTTTAC TTGACGATAG ATTAGCGCAA
GCCACATTGA CTCATCATCG AGATAAATCA AAATTTGCAC TGTTGTTTAT TGATTTAGAT
GGTTTTAAAG CAATAAATGA TCAATATGGT CATCATGTTG GGGATAAGTT ATTACAGCGT
ATCGCCCTGT TATTAGGCAA GCATGTAAGA GAATCTGACA CGGTTGCTCG CTTTGGTGGC
GATGAGTTTG TGGTGTTATT AAATCATATC GAAGCCAAAG AAAATGCCCG TCAAGTGGCT
GAAAATATCT TATTAGGATT AAAGAAACCG TTATTAATCG ATGATATTAA TGTCTCTATT
TCGGCCAGTA TTGGTATCGC TATTTTTCCT AATGATGCCG ATACCGCTGC TTCATTATTG
AAAAAATCAG ATCAGTTAAT GTATCAAGCT AAAAAGGTGG GTGGTCATCA ATATAAAATG
AGCTGA
|
|---|
| Protein sequence | MKFIPWILAM LFAWISLPAQ AIHSDKTELS VDHLPLVIVM GEDTYPFEYL DEKGTPAGIL
VDLWREWSII TDTKVQFVSR HWQQSLDQLE QKKADIHIGM SQNQARLKKF DFAKPFTSLN
TYLYIHKSLS SKKQISDLVP YQVGIVSGSS HEATLLALEP KLSFKRYQNR EQLLQAAVKG
ELFVFAGIEG YQRNLALEQD IAANFYSSSR ILIKKINLAP AVVKGDLDLL NKINQGFELI
PAKVIQQIER RWLGYHRQTT GVIIAMQNGV EPYADIGADG LPHGMLVDLW TLWSEKTGIN
IDFVAGDMSS TIDDVKRGVA DVHIGYPESQ DMRTGLKQAW HIISVKSRFF SSNLTLNNIE
DIVMRIGVYP TAPYISDIKK AFPKAQLRFY DSLDAMVKAA RNDEISGFVS SAAMTSHYLL
ANKLWAEFRQ YTDIEFSTDM YVLTRIDDSG LADRIQAGFN LISVEEQVQV ERKWLINPDD
RFFANSANKI KLTTQQKQYV SSLGAIKMGY LKNWAPMEFQ GKNGEFLGVN ADIKNLLVKQ
LNLTIIPVAY DDFGNMMNDL IKGEIHLVAS MAKTVERENK LAFSLAYWPS PWAIVTSLSQ
PPIFNISQVT GKRLAVVDGY HIVDQLRQQY PGIKLVPVAD TKQGMEAVIT GSADMFVEQV
ATLATTLKGG QYPSLKMSLL AELTEQHSHI GLFPGVKNLV PLIDRVIATI DETEQQNMYQ
KWVSLDLNSD TLRYQRWLKI LVIGLLIITL IAIVILMSNR RLNVEIQKRL KAEENLRFMA
NHDNLTALPN RSLLDDRLAQ ATLTHHRDKS KFALLFIDLD GFKAINDQYG HHVGDKLLQR
IALLLGKHVR ESDTVARFGG DEFVVLLNHI EAKENARQVA ENILLGLKKP LLIDDINVSI
SASIGIAIFP NDADTAASLL KKSDQLMYQA KKVGGHQYKM S
|
|---|
| |