Gene Sfri_2181 details

Gene Information

• Locus tag: Sfri_2181
• Symbol: ruvA
• ID: 4279093
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella frigidimarina NCIMB 400
• Kingdom: Bacteria
• Replicon accession: NC_008345
• Strand: -
• Start bp: 2607789
• End bp: 2608406
• Gene Length: 618 bp
• Protein Length: 205 aa
• Translation table: 11
• GC content: 41%
• IMG OID: 638134976
• Product: Holliday junction DNA helicase RuvA
• Protein accession: YP_750865
• Protein GI: 114563352
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0632] Holliday junction resolvasome, DNA-binding subunit
• TIGRFAM ID: [TIGR00084] Holliday junction DNA helicase, RuvA subunit

Plasmid Coverage information

• Num covering plasmid clones: 19
• Plasmid unclonability p-value: 0.613402
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATAGGTC GTCTAAGCGG AATATTAGTA GAAAAGCAAG CGCCTGAAGT GGTGCTTGAT 
GTCAATGGCG TCGGTTATGA GTTACAAGTG CCGATGACCA GCTTTTATGA ATTACCAGCG 
TTAAACCAAG CTGCTATGTT ATTTACTCAT TTTGTGGTGC GTGAAGATGC TCAGCTACTT 
TACGGTTTTA TCACTAAACA AGAACGTGCA TTATTCCGTT TATTGATTAA AACCAATGGC 
GTTGGGCCTA AACTGGCATT AACTATTTTG TCGGGTATGA CAGCGTCTGA GTTCGTGTCA 
TGTGTTGAAC GTGATGATAT TGCGACTTTA GTAAAACTGC CTGGCGTTGG TAAGAAAACC 
GCAGAGCGTT TGGTGATTGA AATGCGTGAT AAGCTTAAAA GCTTACTTGA AGCTTCTGCA 
GGTTCAGAGC GCGAGTTTAT GCTGCAAAGT AATTATACTC CAGCAGCGGC TGTTGATAGT 
GCAGAAGAAG ATGCCATTTC AGCTTTATTG TCATTAGGTT ATAAACCTGC TCAGGCCAGT 
AAGTCAGTTT CTGCGGCTTT TAAAGAAGGC ATGAGTTCAG AAACGCTAAT TAAAGCTGCA 
TTAAAATCAA TGCTATAA 

 

Protein sequence

MIGRLSGILV EKQAPEVVLD VNGVGYELQV PMTSFYELPA LNQAAMLFTH FVVREDAQLL 
YGFITKQERA LFRLLIKTNG VGPKLALTIL SGMTASEFVS CVERDDIATL VKLPGVGKKT 
AERLVIEMRD KLKSLLEASA GSEREFMLQS NYTPAAAVDS AEEDAISALL SLGYKPAQAS 
KSVSAAFKEG MSSETLIKAA LKSML