| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2180 |
|---|
| Symbol | ruvB |
|---|
| ID | 4279092 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 2606748 |
|---|
| End bp | 2607758 |
|---|
| Gene Length | 1011 bp |
|---|
| Protein Length | 336 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 638134975 |
|---|
| Product | Holliday junction DNA helicase RuvB |
|---|
| Protein accession | YP_750864 |
|---|
| Protein GI | 114563351 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG2255] Holliday junction resolvasome, helicase subunit |
|---|
| TIGRFAM ID | [TIGR00635] Holliday junction DNA helicase, RuvB subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.729966 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTGAAG CTGATCGACT AATCCAACCG CAGGTACAAG GTCAAGATGA ACTGATTGAT
CGTGCTATGC GCCCTAAAAT GTTGGATGAG TATACCGGTC AAGATGATAC TCGAGCTCAG
CTTAAGGTTT TTATTCAAGC CGCGATAAAT CGTCGTGAAG CCCTCGATCA CATGCTGATT
TTTGGTCCTC CAGGTTTGGG GAAAACAACG TTAGCCATGA TTGTGGCTAA CGAAATGGGC
GTGAATATCA AATCCACTTC TGGCCCTGTG CTTGAAAAAG CGGGTGATTT AGCGGCATTA
TTAACCAATC TTGAAGAAGG TGATGTGCTG TTTATTGATG AAATCCATCG CTTAAGCCCT
GTAGTGGAAG AAATTCTTTA TCCAGCAATG GAAGATTACC AACTGGATAT TATGATTGGT
GATGGTCCAG CCGCGCGTTC AATTAAATTG GATTTGCCGC CATTTACTCT TATCGGCGCC
ACGACTCGTG CTGGTGCATT AACCTCGCCA TTGCGGGCTC GTTTTGGTAT TCCATTACGT
TTAGAGTTTT ATAACGTCGC AGACTTAACC ACAATTGTAA CTCGTTCAGC CAACGTAATG
AACCTTGAGA TAGATGAACA AGGGGCTATT GAAATTGCTA AGCGTTCACG CGGAACTCCG
CGAATTGCCA ATCGATTATT ACGTCGAGTA CGCGATTATG CCGAAGTAAA GCATGACGGT
AAAGTGTCTC AAACAGTGGC TGAATATGCA TTGGATTTAT TGGATGTAGA TGACCAAGGT
TTTGATTACT TAGACCGTAA ATTATTATTG GCCATTATTG ATAAATTTAT GGGTGGCCCT
GTTGGATTAG ACAATCTAGC GGCAGCCATC GGTGAAGACC GCGAAACAAT TGAAGATGTA
TTGGAGCCTT TTTTAATTCA ACAAGGGTTT ATTCAACGCA CGCCAAGAGG GCGTATCGCT
TCTCAAAGAG CCTATGATCA TTTTAGTTTG GTTAGACCTG AAAAAGCTTA A
|
|---|
| Protein sequence | MIEADRLIQP QVQGQDELID RAMRPKMLDE YTGQDDTRAQ LKVFIQAAIN RREALDHMLI
FGPPGLGKTT LAMIVANEMG VNIKSTSGPV LEKAGDLAAL LTNLEEGDVL FIDEIHRLSP
VVEEILYPAM EDYQLDIMIG DGPAARSIKL DLPPFTLIGA TTRAGALTSP LRARFGIPLR
LEFYNVADLT TIVTRSANVM NLEIDEQGAI EIAKRSRGTP RIANRLLRRV RDYAEVKHDG
KVSQTVAEYA LDLLDVDDQG FDYLDRKLLL AIIDKFMGGP VGLDNLAAAI GEDRETIEDV
LEPFLIQQGF IQRTPRGRIA SQRAYDHFSL VRPEKA
|
|---|
| |