Gene Sfri_2178 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_2178 
Symbol 
ID4279090 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand+ 
Start bp2605139 
End bp2605780 
Gene Length642 bp 
Protein Length213 aa 
Translation table11 
GC content41% 
IMG OID638134973 
Productendonuclease III 
Protein accessionYP_750862 
Protein GI114563349 
COG category[L] Replication, recombination and repair 
COG ID[COG0177] Predicted EndoIII-related endonuclease 
TIGRFAM ID[TIGR01083] endonuclease III 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.468625 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATAAAG ATAAGCGATA CCAGATACTT ACCAGATTAA GAGACAATAA CCCTAAGCCT 
GAAACTGAAT TGAACTTTTC GAGTCCATTT GAGCTACTCG TTGCGGTCAC GCTATCAGCA 
CAAGCAACCG ATGTGAGTGT CAACAAAGCA ACTGATAAGT TGTTTCCGGT TGCCAATACG 
CCTCAAGCAA TATATGACTT AGGGATTGAC GGGCTTAAGC AATACATCAA AACCATAGGC 
TTATACAATA ACAAAGCTGT TAACGTGATT AACGCTTGTA AAATGTTGAT TGATTTACAT 
GCTGGTGAAG TACCAGAGAA TCGTGAAGCA TTAGAGGCTT TACCAGGCGT AGGACGTAAA 
ACAGCAAATG TGGTCCTCAA TACCGCCTTT GGCTGGCCAA CTATTGCTGT CGATACTCAT 
ATTTTTAGGT TAGCGAATCG AACTAAGTTT GCCCCTGGCA AAAATGTCGA CCAAGTTGAA 
TTGAATATGC TTAAAGTGGT GCCGAGCGAG TTTAAAGTGG ATGTGCATCA TTGGTTTATT 
CTACACGGAC GTTATACCTG TTTAGCACGA AAACCACGAT GCGGCAGCTG TATAATCGAA 
GATTTATGCG AATTTAAAGA CAAGGTATAC CCAGAAGATT AA
 
Protein sequence
MNKDKRYQIL TRLRDNNPKP ETELNFSSPF ELLVAVTLSA QATDVSVNKA TDKLFPVANT 
PQAIYDLGID GLKQYIKTIG LYNNKAVNVI NACKMLIDLH AGEVPENREA LEALPGVGRK 
TANVVLNTAF GWPTIAVDTH IFRLANRTKF APGKNVDQVE LNMLKVVPSE FKVDVHHWFI 
LHGRYTCLAR KPRCGSCIIE DLCEFKDKVY PED