| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2174 |
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| Symbol | |
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| ID | 4279086 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 2600147 |
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| End bp | 2602687 |
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| Gene Length | 2541 bp |
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| Protein Length | 846 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638134969 |
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| Product | electron transport complex protein RnfC |
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| Protein accession | YP_750858 |
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| Protein GI | 114563345 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG4656] Predicted NADH:ubiquinone oxidoreductase, subunit RnfC |
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| TIGRFAM ID | [TIGR00148] UbiD family decarboxylases
[TIGR01945] electron transport complex, RnfABCDGE type, C subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.234957 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCTAACGT TATTAGAGCA ATTAGATAAA GGTACTTTGT GGCGCTCTCC TGGCGGGATC
CATCCACCTG AACTTAAATC ACTTTCCAAT CAAAGCACCA TCGCATCTTT GCCACTGCAA
TCGCGATTTG TGATACCGGT TCCTCTTGTT GGTCAACAAG CGACCTTGAG TGTCAAGGTC
GGCGACTCGG TCTTAAAAGG ACAACCACTC ACTGAAGGTG CTGGTTTTAT TTATTTACCC
GTTCATGCTC CTACTTCAGG GACCGTTGTC GCGATTGAGC AACATGGTAG CAACCATGCC
TCATCATTGC CCGTGTTGAG TTGCATTATC GAAGCTGATG GTCTTGATAC TTGGTGTGAA
CTTACCTCAA GTAAAATTGA ACAACTGTCC AAAGGCGATA TTTTAGCCAA AATAAAGCAA
GCAGGTATTG CAGGAATGGG CGGTGCGGCG TTTCCAAGCC ATGTCAAACT CAATCCAGCG
AGTGAAATCG ATTTAGTCAT TATTAATGGA GTAGAGTGCG AACCCTACAT TAGTGCTGAC
GATCGATTAA TGCGTGAATT CAGTGATGAA ATATTAACGG GTATTAGTAT TATTCATCAT
TTGCTTAACC CACAGCGTAT TATCATCGCC ATTGAAGATA ATAAACCTGA AGCGGCCCAA
GCAATGGAGT CTGCTATTCG TCGCAGTTCA TTGCCTAACG ACATGATCCG CGTCACCGTT
ATTCCGACTA AGTACCCTTC TGGTGGCGAA AAACAACTTA TTCAAATTAT TACTGGCAAA
GAAGTACCCA GTGGCGCCAT TCCTGCTCAA CTTGGTATTG TGGTGCATAA CGTCGGCACA
GCCTATGCAA TTCAAGAAGC GGTATTACAA GGCAAACCAC TCATTGAACG AGTGGTGACG
TTAACCGGTG AATCCATCGG TAAACCCGGA AACTATTGGC TTAGAATAGG CACAACAGTT
GAAGATGCCC TTAGTCAAGT CAGCTTCCAG CCAGAAAGTT CACAAAAAGT CATCGTTGGC
GGCCCCATGA TGGGATACGC ATTAGCCGAT CTTGATGTAC CTATATTAAA AGGCACCAAC
TGTTTATTAA CACCAAGCCA AGCAGAAATA GCCCCAGATC CAGATGAAAA AGCCTGCATT
CGTTGTGGTG AGTGTGCAGT CGCTTGCCCC GCATTATTAT TACCGCAACA ACTATTCTGG
CACGCAAAAG CCGAAGAATA TGACAAAGCT GCTAGTTTCA ATTTAAAAGA TTGTATTGAA
TGCGGTTGTT GCAGCTACGT ATGCCCAAGT GACATTCCTT TAGTTGAATA TTATCGTGTC
GCAAAATCAG CATTGAAAAA TGCTGCTGAA GAAAAGCTAC AAGCTGAACA AGCAAAAATT
CGCTTCGAAA CACGCTTGCA ACGACTTGAA GATGAAAAAA ATGCTCGCGA AGAAAAGTCA
AAACAAGCAG CCGCTAAACG TCAAGCGAAT ATGAAATCCG GTGATAAAGA TGCGGTAGCA
GCTGCAATGG CACGCATCGC TGCTAAAAAA GCACAAGCAG CAGAAGGCAT CACTGCTGAT
CCTGCGGCAA CAACACCTGA TACCACTACA ACAAAAGCAG CAATAGACGC TACCAGCGCG
AAGAAAACAG CGGTTAATGC TGCGATTGAA CGCGCGAAAG CTAAAAAAGC CGCCTTGGCT
ACTCAGTCTC AGAAAGATAA TCAAAGTGAT GTTGCTACGG TAACAAATGA TATGCCTGTC
GACACCATCG ATCGCGCCAA TGACAAAAAA GCACAAATTG CAGCTGCCAT TGCCAGAGCT
AAAGCCAAGA AAGCGGCATT AGCTAATGAA TCTGCCGAGA AAAATGACGT AGACGCCGAA
CAGCCTAGCA ATACCGTAAA CGAAGTTAGT CCGGTAAATG AAACGGCTAC AACAAGTGTA
GTAGACCCGG CCGATGACAA AAAAGCTAAA ATTGCTGCTG CCGTTGCCAA AGCGAAAGCC
AAGAAAGCAG CATTAGCTGG TGATTCTACC GAGAAAAATG ACGTAGACGG TGATCAGACT
CGCGATACTA TAAGCAAAGT TAATCCGGGA ATCGAAGTAG ATACAACTAT TACAGCAACC
TCAGTCGATG ACAAAAAGGC TAGAATTGCT GCTGCCGTTG CCAAAGCGAA AGCCAAGAAA
GCAGCATTAG TTGGTGATTC TACCGAGAAA AATGACATAG ACGGCGATCA GACTCGCGAT
ACGGTAAACG AAGTGAACCG AGCAATCGAA ATTGATACAA CAATTGCAGT AACACCTGTC
GATGACAAAA AGGCTAGAAT TGCTGCCGCT GTTGCTAAAG CGAAAGCCAA GAAAGCGGCA
TTAGCTAGTG ATTCTAGCGC GACAAATGAC GTAGACGGAG TTCAGACTCG CGATACGGTA
AACGAAGTGA ACCCAGCAAT CGAAATTGAT ACAACAATTG CAGCAATCCC AGTTGATGAC
AAAAAGGCTA GAATTGCTGC CGCGGTTGCT AAAGCGAAAG CCAAAAAACT CGCTAACAGT
GCTAAGCAAG AGGAACTATA A
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| Protein sequence | MLTLLEQLDK GTLWRSPGGI HPPELKSLSN QSTIASLPLQ SRFVIPVPLV GQQATLSVKV
GDSVLKGQPL TEGAGFIYLP VHAPTSGTVV AIEQHGSNHA SSLPVLSCII EADGLDTWCE
LTSSKIEQLS KGDILAKIKQ AGIAGMGGAA FPSHVKLNPA SEIDLVIING VECEPYISAD
DRLMREFSDE ILTGISIIHH LLNPQRIIIA IEDNKPEAAQ AMESAIRRSS LPNDMIRVTV
IPTKYPSGGE KQLIQIITGK EVPSGAIPAQ LGIVVHNVGT AYAIQEAVLQ GKPLIERVVT
LTGESIGKPG NYWLRIGTTV EDALSQVSFQ PESSQKVIVG GPMMGYALAD LDVPILKGTN
CLLTPSQAEI APDPDEKACI RCGECAVACP ALLLPQQLFW HAKAEEYDKA ASFNLKDCIE
CGCCSYVCPS DIPLVEYYRV AKSALKNAAE EKLQAEQAKI RFETRLQRLE DEKNAREEKS
KQAAAKRQAN MKSGDKDAVA AAMARIAAKK AQAAEGITAD PAATTPDTTT TKAAIDATSA
KKTAVNAAIE RAKAKKAALA TQSQKDNQSD VATVTNDMPV DTIDRANDKK AQIAAAIARA
KAKKAALANE SAEKNDVDAE QPSNTVNEVS PVNETATTSV VDPADDKKAK IAAAVAKAKA
KKAALAGDST EKNDVDGDQT RDTISKVNPG IEVDTTITAT SVDDKKARIA AAVAKAKAKK
AALVGDSTEK NDIDGDQTRD TVNEVNRAIE IDTTIAVTPV DDKKARIAAA VAKAKAKKAA
LASDSSATND VDGVQTRDTV NEVNPAIEID TTIAAIPVDD KKARIAAAVA KAKAKKLANS
AKQEEL
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