| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2170 |
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| Symbol | |
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| ID | 4279082 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 2592524 |
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| End bp | 2594545 |
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| Gene Length | 2022 bp |
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| Protein Length | 673 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 638134960 |
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| Product | excinuclease ABC subunit B |
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| Protein accession | YP_750854 |
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| Protein GI | 114563341 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0556] Helicase subunit of the DNA excision repair complex |
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| TIGRFAM ID | [TIGR00631] excinuclease ABC, B subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00276805 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGTCAGAGT CAGTATTTTC CCTTGAGTCC AAATTCGAAC CCGCCGGCGA TCAACCTACA
GCGATAAAAA AATTAGTAGA TGGCTTAGAA TCTGGCGTTG CTAGCCAAAC GTTATTAGGC
GTAACAGGGT CAGGTAAAAC TTACACTATC GCGAATGTGA TTAAGCAAAT GGGCAGGCCA
ACTATCATTA TGGCGCCCAA CAAAACACTT GCTGCGCAAC TTTATGGTGA GATGAAAGAA
TTTTTTCCGC ATAACGCGGT TGAATACTTT GTTTCTTATT ATGATTACTA TCAACCAGAA
GCTTATGTAC CCGCTTCTAA TACCTTTATA GAAAAAGATG CATCGGTGAA TGCCCATATC
GAACAAATGC GTTTATCGGC CACTAAAGCG CTATTAGAGC GTAAAGATGT GGTGCTTATT
GCCTCAGTGT CAGCCATATA TGGTTTGGGC GATCCAGATT CTTATATGAA GATGTTATTG
CATTTGCGCC AAGGTGATTT TATGGGCCAA CGTGACATCC TCATTCGGCT TAGTGAATTA
CAATACAAAC GTAATGATAT TGAGTTACAA CGCGGAACAT ATCGTGTTCG CGGTGAAGTG
ATAGACATTT TTCCGGCAGA ATCTGAACGC GAAGCTATTC GAATAGAATT ATTTGACGAC
GAAATAGAAC GCTTAAGTGA ATTTGATCCT TTGACCGGGC AGATTAACAA ACGAATAGCA
CGCGCCACCA TTTATCCCAA AACGCATTAT GTAACGCCAA GAGAGAAAAT ATTAGCGGCA
ACTGAAGAGA TCAAAGAAGA ACTCAGAGAA CGTCGTCAAT ATTTACTCGA TAACAACAAA
TTAATTGAAG CTCAACGGAT CACCGAGCGC GTTCAATACG ACATTGAAAT GATGGTCGAG
CTAGGATATT GCTCAGGGAT TGAAAACTAC TCTCGATATT TATCAGGCAG ATCCTCTGGA
GATGGGCCAC CAACATTATT AGATTACTTA CCTGCCGATG GTTTGCTGAT TATTGATGAG
TCACATGTGA CAGTGCCGCA AATAGGGGCG ATGTACAAAG GCGATAGAAG CCGGAAAATG
AACTTAGTGG AGTATGGGTT TCGATTACCA TCAGCATTGG ATAACCGGCC GTTAATGTTT
GAGGAGTTTG AACGGTTGAT GCCGCAAACT ATTTTTGTTT CAGCAACACC CAGCTTATAT
GAGCTTGAAA AAAGTACCGG CGAGATAGCA GAGCAGGTGG TAAGGCCAAC TGGGTTACTC
GATCCTGTGC TGGAAGTTCG GCCCGTGGGC ATTCAAGTTG ACGATTTGTT GTCTGAGATC
CACAAACGCG TGGCGGTTAA TGAACGTGTG CTGGTAACCA CATTAACCAA ACGGATGTCT
GAAGATCTGA GTGAATACCT TGATGAACAT GGGGTTAAAG TTCGTTATTT ACATTCGGAT
ATTGATACTG TTGAGCGCGT AGAAATTATT CGTGATTTAC GCTTGGGGCG TTTTGACGTA
CTGATTGGCA TTAACTTATT ACGTGAAGGT TTAGATCTAC CTGAAGTGTC ATTAGTGTGT
ATTTTAGATG CCGACAAAGA AGGCTTTTTA CGTTCAGAGC GCTCACTTAT TCAGACCATC
GGCCGCGCTG CTCGTAACGT TAACGGTAAA GTCATTCTGT ATGCGGACCG AATAACAAAC
TCAATGGCTA AAGCCATGGG AGAAACTGAG CGTCGCCGTG AAAAACAGCA TCAACACAAC
CTTAAGCTGG GTATTGTGCC TCGTGGAGTA GTGAAAAGTA TTACCGATGT AATGGATGTG
GGTGATACTA ACTTCAGTAA AGGTACCCGT AAAAATCACT CTAAATTTGC TGAAGTGGCA
GAAGAACGCG CGAAATACAC CAGTATTGCC GACTTGAGTC ATCAAATTGA TAAACTGGAA
AAACAAATGC ATGAACATGC TAAAAACCTA GAGTTTGAGC AAGCTGCCGC AGTGCGTGAT
GACGTCAAAC ATTTACGTGA CCTGATTATT GTAAATAGTT AA
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| Protein sequence | MSESVFSLES KFEPAGDQPT AIKKLVDGLE SGVASQTLLG VTGSGKTYTI ANVIKQMGRP
TIIMAPNKTL AAQLYGEMKE FFPHNAVEYF VSYYDYYQPE AYVPASNTFI EKDASVNAHI
EQMRLSATKA LLERKDVVLI ASVSAIYGLG DPDSYMKMLL HLRQGDFMGQ RDILIRLSEL
QYKRNDIELQ RGTYRVRGEV IDIFPAESER EAIRIELFDD EIERLSEFDP LTGQINKRIA
RATIYPKTHY VTPREKILAA TEEIKEELRE RRQYLLDNNK LIEAQRITER VQYDIEMMVE
LGYCSGIENY SRYLSGRSSG DGPPTLLDYL PADGLLIIDE SHVTVPQIGA MYKGDRSRKM
NLVEYGFRLP SALDNRPLMF EEFERLMPQT IFVSATPSLY ELEKSTGEIA EQVVRPTGLL
DPVLEVRPVG IQVDDLLSEI HKRVAVNERV LVTTLTKRMS EDLSEYLDEH GVKVRYLHSD
IDTVERVEII RDLRLGRFDV LIGINLLREG LDLPEVSLVC ILDADKEGFL RSERSLIQTI
GRAARNVNGK VILYADRITN SMAKAMGETE RRREKQHQHN LKLGIVPRGV VKSITDVMDV
GDTNFSKGTR KNHSKFAEVA EERAKYTSIA DLSHQIDKLE KQMHEHAKNL EFEQAAAVRD
DVKHLRDLII VNS
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