Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_2153 |
Symbol | |
ID | 4279065 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 2561783 |
End bp | 2563102 |
Gene Length | 1320 bp |
Protein Length | 439 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 638134942 |
Product | DEAD/DEAH box helicase domain-containing protein |
Protein accession | YP_750837 |
Protein GI | 114563324 |
COG category | [J] Translation, ribosomal structure and biogenesis [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG0513] Superfamily II DNA and RNA helicases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.0826184 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCTTTTT CGACACTTGG ATTACGCGAC ACGATTGTCA ATGCCCTACA TGAAGTGGGA TACAGTCAGC CGACACCTAT TCAACAACAG ACTATTCCGG TTATTTTAAA GGGTAAGAAC CTGCTCGCCG CTGCGCAAAC TGGTACCGGT AAAACCGCAA GTTTTGTATT ACCAATATTA GAACGCTTAG CCGACACTGA AATCCAGCGT GCAAAACGTA TTCGAGCGTT GATTTTAACC CCAACTCGCG AACTCGCAGT GCAAGTTCAT GCCAACGTAG TGCAGTACGC CAAGCATTTA CCATTAACCT CTATTGCCAT TTATGGTGGA GTTGATGAGA AGCCGCAAAA ACAAGCCTTA ATCGATGGTG TCGATATTTT GGTGGCCACA CCGGGACGTT TACTAGACTT ATATACTCAA CGTGCCGTGC ACTTTGATGA AGTTGAAGTG TTGGTGCTTG ATGAAGCCGA TAGAATGCTC GACATGGGCT TTATCGAAGA TATTAATAAA ATCATCGATA AATTACCTTC TGAACGTCAG AGTTTATTGT TTTCCGCGAC GTTATCAAAC CAAGTGCGAG CGTTAGCGAA AACGGCCATT AAACGTCCTG TGGAAATTTC AGTGATTGCT GATCGCGATT CAGCACCGAA AATCGAGCAG TGGTTAACGA CGGTTGATAA AGATAAAAAA TCAGCTTTAT TAAGTCATTT AATTAAAACC GAAGAGTGGA ACCAAGCACT CATCTTTATC GAAACCAAAC AAGGTGCTGC CAAATTGGTG AGTCAGCTTG AAAAGCGTGA TATTGCTGCA GAGTGTATTC ACAGTGGCCG AAGCCAGCCG GTGCGTGAAC AAATTTTAGC TGATTTTAAA TCGGGTAACA TTAAATACCT TGTGGCTACC GGCATTGCAG CGCGCGGTAT TGATATTGAC GATTTATCGC GTGTTGTTAA TTATGACTTA CCTTATCCGG CCGATGACTA TATTCATCGT ATTGGTCGTA CCGGTCGTGC GGGCGCTGCT GGTGTTGCTA TTTCTTTTGT GTCCAATGAT GACTTTAAAA ATTTGTGTAT GATTGAAAGC CGTTTAGGGC ATTTAATTGA ACGTAAAGAA ATAGCGGGGT TTGAACCCTC GAAGCCAATT CCTATTTCAG TGTTGAATTT TATTCCTAAA AATCGTCAGC ATAAATCAAC ATCAGCGACA GATCGACCAA CGCTGAGTTT GGGCAAGTCG AAAACAGCTT CTGCTGATTT TAGAAAAACC AAACCATCTA AAGCGTCAAC TACGCCTAAG GGTAACAAAC CTAATCCCTG GAACATTTAA
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Protein sequence | MPFSTLGLRD TIVNALHEVG YSQPTPIQQQ TIPVILKGKN LLAAAQTGTG KTASFVLPIL ERLADTEIQR AKRIRALILT PTRELAVQVH ANVVQYAKHL PLTSIAIYGG VDEKPQKQAL IDGVDILVAT PGRLLDLYTQ RAVHFDEVEV LVLDEADRML DMGFIEDINK IIDKLPSERQ SLLFSATLSN QVRALAKTAI KRPVEISVIA DRDSAPKIEQ WLTTVDKDKK SALLSHLIKT EEWNQALIFI ETKQGAAKLV SQLEKRDIAA ECIHSGRSQP VREQILADFK SGNIKYLVAT GIAARGIDID DLSRVVNYDL PYPADDYIHR IGRTGRAGAA GVAISFVSND DFKNLCMIES RLGHLIERKE IAGFEPSKPI PISVLNFIPK NRQHKSTSAT DRPTLSLGKS KTASADFRKT KPSKASTTPK GNKPNPWNI
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