| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2108 |
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| Symbol | |
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| ID | 4279020 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 2509925 |
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| End bp | 2512336 |
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| Gene Length | 2412 bp |
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| Protein Length | 803 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638134897 |
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| Product | (NiFe) hydrogenase maturation protein HypF |
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| Protein accession | YP_750792 |
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| Protein GI | 114563279 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0068] Hydrogenase maturation factor |
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| TIGRFAM ID | [TIGR00143] [NiFe] hydrogenase maturation protein HypF |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACCAT TACAGCAAGT TACCATTATT GTTAAAGGTA TTGTGCAAGG GGTTGGTTTT
CGCCCCTTTG TTTTTCGTTT GGCACATCAG TTAACTTTAC TCGGTAGCGT GCTAAATAAT
CACCTTGGGG TGACGATTGT TTTACAAGGT AATAGCGAAC TGATTGAACA GTTTATCGAT
AAATTAGCTA AATCTCCGCC GCCATTAGCG CGCATTGATG CCATTGAGGT TACTCATCAA
GCTCAATTAA GTTTATTTGA CCAATTTAGT ATTATTGATA GCCATGCCGC TACTGACGAA
CATGCAAATG TGGCTATTTC GGCCGACATG AGTATTTGCC GAGATTGTCT TAACGACATT
AATGACCCTC AAAACCGCCA CTATCAATAC CCATTTACCA ATTGCACCAA TTGCGGTCCG
CGCTACACCA TTATCAACAC CCTGCCTTAT GACCGATGCA ACACTGCCAT GGCTGATTTT
GAAATGTGCG ATGATTGCCA CGCCGCTTAT ATCAATCCAA TGAATCGACG CTACCATGCA
CAACCAGTGA GTTGCCCACA TTGTGGTCCA CAATTAACCT TTAGCGTTAT CAATGCTCGT
GCTGAATGTC TTTATGATTC ATCGATGTTG ATGGCATTAG AGCAAGCCGT CGAAATGATA
AACCGTGGTG GCATAGTGGC CATTAAAGGT TTAGGCGGTT TTCATTTAGT GTGTGATGCC
ACCAATAACG ACGCGGTTGC AGCTCTGCGT CAACGTAAAC AACGCCTCGC CAAGCCATTA
GCGATAATGG TGACTAACTT GGCCCAGGCG AAATTATGTG TCAGCGGTAC TGAAACGGAA
TGGCAAGTAT TAACCAGCCC TGAGAAGCCG ATTACCTTGA TGACCAAACG TGTTGCTAGT
GTTGATGGTA AAGATAATGG TAGAGATAAT TGCGGAAATA TTCACCCTAT CGCACTGAGT
CCATTGCTAG CGCCGGGTAT TGATCGCCTT GGAGTATTTT TACCCTACAC ACCATTACAT
CATTTATTGA TGCAGCGATT ACACAAACCC ATTGTGGCTA CCAGTGCCAA TCGCAGCGGA
GAACCCATTA TTGCTAATCA AGCTGAGATT GAGCAGCATT TAAGCCATGT AGTTGATGGG
ATCCTCGGCC ATAATAGGCC GATTATTAAT GCCTGTGATG ACAGCGTGGT ACAAGTGATT
GACGGGCAGC TACAAGTCAT TCGATTAGCT CGTGGTTATG CGCCGCTAAC CATTAATTTG
CACTCACCGA TGCTATCAAA CAGTAAAAAT AGCGTGTTGG CTGTTGGCGC ACAACAGAAA
AATACGGTCG CATTCGGTTT TGCCGATAAT CTGATCGTAT CACCGCACAT TGGTGATTTA
TTCACTCTAG AAACAGAGCA ATATTTTAGC CGAAGCTTAG CAACATTTAA GCGTTTGTAT
GACTTTAGCC CAAGTCATAT TGTGCATGAT AATCACCCGC AATATGCGCC GACACAATGG
GCAGTAAACT ACCAATCTGA ACATCGCCTT TTGCCATCTC ATTGCATTGG CATACAACAC
CACTTCGCCC ATGTTTTGTC TGTTATGGCG ATGCACCAAC GCACTGAGCA AGTATTAGGA
TTCAGTTTTG ATGGCACAGG CCTAGGTGAT GACGGCACAT TATGGGGCAG CGAAGTAATG
CTGGCTGATG TGCACGGTTT TACCACGGTG GCCCACTTTA GTTCGTTTAA GTTAATTGGT
GGTGAGCAAG CGATTAAACA CCCAGTTAGA ATTCTGCTGG CATTATTGTT TGAACAAATG
TCGCTTGAAC AAGTACTTTC ACTCCCCATT GCCGCTATCG CCGACTTAGG CAGCAAAACT
GTCACTAATT TGTATCAGCT GTGGCGTAAC AATAGCCATT GTATTGAATG TCGATCTGTT
GGGCGTTTAT TTGATGCTCT TGCTGTAGCG TTAGGTTTTA TTGCTAGCTC GCAGTACGAA
GGTCAAGCGG GCATGATGAT TGAAACAGCA GCCAATGCCT ATTATACCGA ATCAAATATT
GAGCCTTTAT CTGTAACGCT CAACACCTTA TACGACCAAG AGTCGTTACC TATTCAATGG
CACAGTAGCG ACTTTATTAC TCAATTGGTT AACTGCGCGG TGGAATACTC ACATAACCCT
TTAATTAAAA AACAAATATG TTGGCATTTT ATCAATATGA TTAGTCAGCA ATTGGATAGA
GTTGGTCAAC AATATCCCCA ATTACCACAG GTATTTTGTG GTGGTGTATT TCAAAACAAA
ACCTTACTCA GCCAGTGTAT TGATGATTGT AAACGTGGCC AACGGCAAAT TTTACCCAGT
GGCCATATTC CCATTAATGA CGGTGGTATT GCATTAGGCC AATTGTGGTA TGGCATACAT
CACATGGCGT AA
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| Protein sequence | MKPLQQVTII VKGIVQGVGF RPFVFRLAHQ LTLLGSVLNN HLGVTIVLQG NSELIEQFID
KLAKSPPPLA RIDAIEVTHQ AQLSLFDQFS IIDSHAATDE HANVAISADM SICRDCLNDI
NDPQNRHYQY PFTNCTNCGP RYTIINTLPY DRCNTAMADF EMCDDCHAAY INPMNRRYHA
QPVSCPHCGP QLTFSVINAR AECLYDSSML MALEQAVEMI NRGGIVAIKG LGGFHLVCDA
TNNDAVAALR QRKQRLAKPL AIMVTNLAQA KLCVSGTETE WQVLTSPEKP ITLMTKRVAS
VDGKDNGRDN CGNIHPIALS PLLAPGIDRL GVFLPYTPLH HLLMQRLHKP IVATSANRSG
EPIIANQAEI EQHLSHVVDG ILGHNRPIIN ACDDSVVQVI DGQLQVIRLA RGYAPLTINL
HSPMLSNSKN SVLAVGAQQK NTVAFGFADN LIVSPHIGDL FTLETEQYFS RSLATFKRLY
DFSPSHIVHD NHPQYAPTQW AVNYQSEHRL LPSHCIGIQH HFAHVLSVMA MHQRTEQVLG
FSFDGTGLGD DGTLWGSEVM LADVHGFTTV AHFSSFKLIG GEQAIKHPVR ILLALLFEQM
SLEQVLSLPI AAIADLGSKT VTNLYQLWRN NSHCIECRSV GRLFDALAVA LGFIASSQYE
GQAGMMIETA ANAYYTESNI EPLSVTLNTL YDQESLPIQW HSSDFITQLV NCAVEYSHNP
LIKKQICWHF INMISQQLDR VGQQYPQLPQ VFCGGVFQNK TLLSQCIDDC KRGQRQILPS
GHIPINDGGI ALGQLWYGIH HMA
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