Gene Sfri_2105 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_2105 
Symbol 
ID4279017 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp2506641 
End bp2507309 
Gene Length669 bp 
Protein Length222 aa 
Translation table11 
GC content42% 
IMG OID638134894 
ProductNi/Fe-hydrogenase, b-type cytochrome subunit 
Protein accessionYP_750789 
Protein GI114563276 
COG category[C] Energy production and conversion 
COG ID[COG1969] Ni,Fe-hydrogenase I cytochrome b subunit 
TIGRFAM ID[TIGR02125] Ni/Fe-hydrogenase, b-type cytochrome subunit 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAACATA TTGCAACCCA TAATCGGCAG CTGATATTTA CTCCAGCGAT TCGAATATTT 
CACTGGTTAC GCGCTCTGGC CATTTTGGTA TTAGTGATCA CCGGATTTTA TATCTCGTGG
CCATTTTTAG TGGCGCCTGC CAGCACTGAT GTACTGGTAC AAGGTTGGAT CCGATTTGCG
CATATCATTT TTGGATTTGT GCTCACCAGT ATCACTTTGG TGCGTTTTTA TTTGTTTTTC
TTCAGTCGCA ACAACATTGA AAGACGTTCG TTTAAAGATG TGCTGAGTGT GAAAAGCTGG
ATAACACAAT TAAAATCCTA TTTATGGATG GGTAATTTGC ATAAAGCTGG GGTTTACGGA
CCGTTACAGT TTATGACTTA TGTGGCGATT TCGTTTGTTG CCTTGATTGT GTGTATCACA
GGCTTAGTGC TGTACGCCAA TGTGTACCAC TTAGGCCTGG GCGGGTTACT TGGCGATGTA
TCTGCATGGT TAACAGCACT TTGTGGCGGC TTAGCATCAC TTAGAACCTT CCACCATTAT
TTAACTTGGG CTTTCATTAT TTTTGTGGTG ATCCATGTGT ATATGGCGGT GTGGTCGGGT
ATTCGCTTTA AACATAATTC AGTCGACTCA ATAGTGTCTG GCTATGACTA TCACAAAGAT
CATAAATAA
 
Protein sequence
MEHIATHNRQ LIFTPAIRIF HWLRALAILV LVITGFYISW PFLVAPASTD VLVQGWIRFA 
HIIFGFVLTS ITLVRFYLFF FSRNNIERRS FKDVLSVKSW ITQLKSYLWM GNLHKAGVYG
PLQFMTYVAI SFVALIVCIT GLVLYANVYH LGLGGLLGDV SAWLTALCGG LASLRTFHHY
LTWAFIIFVV IHVYMAVWSG IRFKHNSVDS IVSGYDYHKD HK