| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2103 |
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| Symbol | |
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| ID | 4279015 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 2503767 |
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| End bp | 2504903 |
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| Gene Length | 1137 bp |
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| Protein Length | 378 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638134892 |
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| Product | hydrogenase (NiFe) small subunit HydA |
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| Protein accession | YP_750787 |
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| Protein GI | 114563274 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1740] Ni,Fe-hydrogenase I small subunit |
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| TIGRFAM ID | [TIGR00391] hydrogenase (NiFe) small subunit (hydA)
[TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACACAC ATGCAGCCCT TTATAAACAG GGTCAAGATC GCCTTGATTA TTTACGCCAA
TTTGCCCAAC GTCAGCCCGT GTCACTACAA CAAAAAATGG CCAACATTGG GATATCTCGT
CGAGACTTCA TTAAGTGGAC CGCGTCGGTC ACTGCAATGT TTGCCTTGCC CCTACCCTTT
AGTAATCTGG TTGCCGAAGC GGCTGAATTA GCCGACCGAG TGCCGCTAAT TTGGTTACAT
TTAGCCGAAT GTACTGGGTG CTCTGAGTCA TTAATTCGTA CCGATTCGCC CAATTTAGAC
ACATTGATTT TTGATCATAT CTCGCTTGAA TATCATGAAA CCTTAATGGC AGCTTCTGGT
TGGCAAGCCG AAGAGAACCT AGAGCATGCA CTGGAAACTT ACAAAGGTCG GTATTTACTG
GCCGTTGAAG GTGCCGTCCC TACCGCCAAT AACGGCACCT TTTTAACCGT AGGCTGTAAA
GGTCACACTG GTTTACACAT TGTTAAAGAA GCGGCTGAAA ATGCTGCTGC AATTATCTCT
GTCGGGACTT GCGCTGCCTT TGGTGGTGTA CAAGCCGCTG CACCCAATCC TACTGGTGCA
AAAGGCGTTT ACGAAGTGGT CGATAAACCT GTGATTAACT TAGGCGGTTG CCCTCCGAGC
GAAAAGAACA TTGTTGGCAC GCTAATGTAT TTCATTATGT TCGGTAAGTT ACCTGCACTG
GATATGTTTA ATCGTCCTAA ATGGGCTTAC GGCGCACGGG TACATGATAA CTGTGAACGT
CGTGGGCGCT TTGATGCTGG TGAGTTTGTT GAAGAATTTG GTGATGAAGG TGCAAAAGAA
GGTTACTGCC TTTATAAAGT CGGCTGTAAA GGCCCATATA CCTACAACAA CTGCCCTACT
GAGCGTTTTA ACCATCACAC CAGTTGGCCG GTGTTAGCGG GTCATGGCTG TATGGGTTGC
TCTGAGCCGA ATTTTTGGGA TGACATGGCG GACTTTGAAA AACCGCTAGG ACGCCAACTT
TTACATGGCA TAGATGCCAC CGCAGACACC ATTGGTGCGG TCATTTTAGG CGCTACCGTT
GTTGGTATTG GCGCCCATGC AGTTGCTAGC GTATTTGCTA AGCCTTTGGA GGAATAA
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| Protein sequence | MDTHAALYKQ GQDRLDYLRQ FAQRQPVSLQ QKMANIGISR RDFIKWTASV TAMFALPLPF
SNLVAEAAEL ADRVPLIWLH LAECTGCSES LIRTDSPNLD TLIFDHISLE YHETLMAASG
WQAEENLEHA LETYKGRYLL AVEGAVPTAN NGTFLTVGCK GHTGLHIVKE AAENAAAIIS
VGTCAAFGGV QAAAPNPTGA KGVYEVVDKP VINLGGCPPS EKNIVGTLMY FIMFGKLPAL
DMFNRPKWAY GARVHDNCER RGRFDAGEFV EEFGDEGAKE GYCLYKVGCK GPYTYNNCPT
ERFNHHTSWP VLAGHGCMGC SEPNFWDDMA DFEKPLGRQL LHGIDATADT IGAVILGATV
VGIGAHAVAS VFAKPLEE
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