| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2088 |
|---|
| Symbol | |
|---|
| ID | 4279000 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 2482240 |
|---|
| End bp | 2484582 |
|---|
| Gene Length | 2343 bp |
|---|
| Protein Length | 780 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 638134877 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_750772 |
|---|
| Protein GI | 114563259 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.346765 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAAAAAT CGTTGGATAT TTTCAAAGCT GATCCTCAAT CTGTATTTGA TGTACTATGC
GATAGAAAAA ATACAGGCTT TTACATGCCT GCTTACCAGA GACCTTACTC ATGGGAAGAA
GCCCATATCA AAGATTTGTT TTCTGATTGC GACAATGTGT TTAGAAATCT CCTAGATTCA
TCTGACGCAA TTATATTTCT TGGATCAATA CTTAGTGTGG ACGATAGTGG CGCACAAACT
ATATATCCTT TAGCTAAACG ACACACACCT ACCCATATAA AACTCATTAT TGACGGCCAA
CAGCGTTTAT CTACTCTAGC TATCATTATC ATGTGTCTTA ACGAAAGATT ACGTTTTCTT
TTACCTAAAC TGAAGAAATC AATAGAAGAT GAAGTAGATG ATGATGCAAT CGATACTCTT
GAAAATTTAA GAGAAATTGT TTCACAAAGT ATTTTAGACA CATCAAACTT TGTAATTGAA
ACTACTGCTG AGCATAGTTT ATATAAATAT CTTCCGAAGA TTATTCGTTC ACAATTAGAT
TGTTGGGGTA AAGATGAGAA AAATGCAGTA TATGAAAGTC CTATTTCTGA ATTACTTATC
AGCTATCAAA GACATATTAT TGAGTCAGAC GGTTCAACAA TTTTCAAAGA AATAGATCTT
AGTGTGCTAA GTGACTCATG TAAACGAGTT GTAAATAATG TTAAAGAAAT CAGAAGGCAG
CTTAATTGTA TACAAAATGG TTTTCAGTTC AAAAACCAAG ATGAAGATGG TGAAGAAAAA
CTCCTGATTA GTGATTTCGT AAATGTTGAT ACTTTAGATA TATGTTTAGA TTTTCCTATT
GATGAAAGTT TATTAAAAGC ATCGAAAAAT AACACTAAGA TTCAAGATAT TATTTTCATT
ACAGCTTTTA CTAAATTCTT GTTACATAGA GTTTGTCTTA CTTTTGTTGA AGTTAACAAT
GAATCCTATG CTTTTGACAT GTTTGAAGCC CTTAATACGA CTGGTGAGCC CTTAACAGCG
ATAGAAACTT TTGTTCCGAA AGTTATTGAA CATATTGGTT ATAAACGTAA TGAAGGTGAA
CCTGGAGTTG ATGAAGCTAT GTTATCGCTT AATTCGATTA CAGATCGCTT CGAGAGGATG
ATTAAGAGCA AAGATAAAAA TGACAAGACT AAGGCACTTA TATTAGCTTT TATTCGGGCC
TATGACGGTA GGGTAAAGGT AACAAGTTTA CGAGATCAGC GTGATGCTAT GTTAAAAAGT
TATGAACAAT GTGCATATGT AAATAAAGAT GAATATTTAG CTCAATTAGG CTCTACAGCA
AAATTTTTAT TTGATCATTG GCAGTCTCCA GTTCCTGACG TTAATGGACT TGTATCTAAT
TCTGATTTGG ATACTGCCAA TGTGTGTTTA CGTTACCTTG TAGATATGAA ACACGATATT
GTTCAGCCAT TACTAATTCA GTTCATGTTA CAAGACGAAA AGTATCAGTT TGTCGGTAAT
GTCGACTCTA GTTTTATTAA AGTTTTAAAG GCAATAACAG CATTTAGTGT ATTGTGGCGA
GCTATGAGTG GTGGCGCAGA TGGTATTGAT GGTGTTTATA AGAAACTGCA TGAAAAAGGT
TTCGATATTT CAGGTGTTCA CTCTAAAGCT TACAAATTAA AAGATAGTAC AATAAGTTCT
GAAGAATTTA ATGTGGATGC TGTAAAAGCT TTTTTTGTTC AAGAACTTGA AAGTAAAATT
ATTGATAAAG AGTCACCTAA AGATGGCGCG TATGAAAAAT GGTTGGATAT TTGTTCAAAA
CAGCCACTTT TAACTAAGTC AAAAAGTATA AAGTTATTAT TGTTAGCGGG ATTTCATGGT
GTTAAGTTAG AAGGTGAAAA CTTTATAAGA TCTGAAGAAC CAATAACTCA ATTTATAACT
CCAATTATGT GGGAATTGGT TTCTAATAAA GACCGTATTA AAAAAGTTTA TAGCGGAGGG
ACTTCTTCGT CAGGATGGTC TGATCCTAAT ATTTTCAACC CGGAAGTATT TAACAAATTA
GGTAATGTGC TTGTAGATGC TCGTGATAAT ATTATTACAT CTTCTACAAA GACTTCATGG
TACAGCATTA AGCAAAATAT GTTAGATGCA TTATCTAACG ACTCTCTTGA GAACATCAAT
AGTATTTTCT CTGAAAAATC TATTATCTCT GATGAAGCAA AGAGACATGC ATCCATATTG
CTTTTAGAGA GTAAATATGA AGAAGTTACA TTTGCAGATG AGTGGGATAA AAATGCTATT
GATGAAAGAA CCATGCTGCT ACTCAAAAAC GCATGGACAA ACCTAAATCA ATGGCTTAAA
TAG
|
|---|
| Protein sequence | MQKSLDIFKA DPQSVFDVLC DRKNTGFYMP AYQRPYSWEE AHIKDLFSDC DNVFRNLLDS
SDAIIFLGSI LSVDDSGAQT IYPLAKRHTP THIKLIIDGQ QRLSTLAIII MCLNERLRFL
LPKLKKSIED EVDDDAIDTL ENLREIVSQS ILDTSNFVIE TTAEHSLYKY LPKIIRSQLD
CWGKDEKNAV YESPISELLI SYQRHIIESD GSTIFKEIDL SVLSDSCKRV VNNVKEIRRQ
LNCIQNGFQF KNQDEDGEEK LLISDFVNVD TLDICLDFPI DESLLKASKN NTKIQDIIFI
TAFTKFLLHR VCLTFVEVNN ESYAFDMFEA LNTTGEPLTA IETFVPKVIE HIGYKRNEGE
PGVDEAMLSL NSITDRFERM IKSKDKNDKT KALILAFIRA YDGRVKVTSL RDQRDAMLKS
YEQCAYVNKD EYLAQLGSTA KFLFDHWQSP VPDVNGLVSN SDLDTANVCL RYLVDMKHDI
VQPLLIQFML QDEKYQFVGN VDSSFIKVLK AITAFSVLWR AMSGGADGID GVYKKLHEKG
FDISGVHSKA YKLKDSTISS EEFNVDAVKA FFVQELESKI IDKESPKDGA YEKWLDICSK
QPLLTKSKSI KLLLLAGFHG VKLEGENFIR SEEPITQFIT PIMWELVSNK DRIKKVYSGG
TSSSGWSDPN IFNPEVFNKL GNVLVDARDN IITSSTKTSW YSIKQNMLDA LSNDSLENIN
SIFSEKSIIS DEAKRHASIL LLESKYEEVT FADEWDKNAI DERTMLLLKN AWTNLNQWLK
|
|---|
| |