| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2079 |
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| Symbol | |
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| ID | 4278991 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 2469255 |
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| End bp | 2472239 |
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| Gene Length | 2985 bp |
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| Protein Length | 994 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 638134868 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_750763 |
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| Protein GI | 114563250 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0000280363 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGTTGA ATAAAATAGG CGCCATGTTC AGTGGTGCTA AAAACAAAGC CAACAATATA
ACCATTTTTG GCGCGACTTT AACAGCCATG TTAACCATGC CAGCATTAGC TGCAGAACCA
ACAGCACAAA CTGAAGCAGA AAAAGTTAAA GCAAGTGAAA TTGAAGTTAT AGCCGTTCGA
GGCATATTTG GCAGCTTAAA AGCGGCTAAC TTACTTAAAC GTACTGACGA ACGAATTGTC
GATGTTATCG TTGCCGAAGA TATTGGTAAA TTACCAGACA ACAACATTGC TGAAGCATTG
CAACGTATAA CAGGTGTTTC TATTGAATCT GATTTTGGTG TAGGCGAATC AGTCACTATC
CGCGGTGTAT CAGAAAACCT CATTTTGCTT AATGGTCGTT CAACAGCAGG CCCTGGGCGA
GGTGGTATTA GTTTAGATGA CTTCCCTGCT AGCTTCTTAA AAACAGTTGA AGTGATTAAA
TCTCCAACGC CTGAAATGAT TGAAGGTGCT TTAGGTGGCA CAGTTAACAT GCAAACAGTA
CGCCCATTAG AACTTAGTGA GCCGCTAGTT GCGATTACCC TCGACGGTGA ATACGCAGAC
AAAACTGAAA ATGTTGCCCC AAACTTTACC GCCGCAATCG GTAATAGCTG GGATTTAGGT
GATGCCGGTA CCTTCGGTGC TGCAGCTAAC GTATCGTACC AAGACCGTGA ATTACGTCGT
GACGAGTATT TTAACAAGGT TGATTTACAA GACGATATCG ATTTAGACGG TGATGGCACT
GTTGATGTAT CTGGTGGCCC TAACGGCAAA TACCTTCGTA GAACAGAAAG TACAGTAGAG
CAAAAAACAG AACAACGTGA ACGTACTGCA TTTGGTTTAT CACTACAGTG GGCGCCAACC
AGCGAAGAGC TTAATTTCTA CGTTGACATG AACTCGACAA AACTGGATGG CGGCCAAGCG
GCTTATTCAA TTCTCGATGT TGGTGGTACC GTGGTGCCAA GAAGTGATTC CTACTACGAT
GGTAATGGAC AACTGCAAAA TTACGACCTA AGTGGCGTAT TGGTTATTCC TAAAACCTGG
AGTGACTTTA CAACATCAGA AACAACTTCT CATGCTATCG GCGGTGAGTG GAATATTACT
GATAACATCG AAATCTCGGG CGAATATTCA ATCTCTAAAT CAGAAGAACG TCAAACAGCT
TCTGAATTTA ACTTGCGCCC AATTGAACGC ACAGACCCTA CCCTTGATCT AGTAACACAT
ACCAGCACAG CAAGCATGAC TAATGGTGGT GGCATTCCAT CTTATGTCTT TGAAGACACA
GGTATGTTAA CTAATCCAGA CAACTTGGTA TTCCGTGAGT TTTACCACAA AACGTTAGAC
ACAGATAACG AAGAACAAGC ATTACGCTTT GACTTCAAAA TCCACGATGT GGGTGTAGAT
TTTATCTCTG CAATCAAAAC GGGTGTACGC TTTACCGATA GAGATTACAG TTCAAATCGC
TTTGATCTTA AACCTAATGG CAACACGCTT AAAGATTCGT ATAAAAAAGC TAAAAATGCA
GACGGCTTAT ATAGCCCAAC CTGGATTGAT AACCCAATTA TCAGCGACAG TTTTACCACT
ATCAATGCCA GCAACTCATT CGACCAAACC GGTATGTCTG GTCAAAATGA CCTACTAACC
TACAACGTGT ATGACGCTGA AAAACTGCAA GATGCTGAAG CAACTTACTT ACTAGCCCAA
CAAATGCTAG CAGGTACCAC TTATGCAATG AACGGTACTT TAGCTGACAA CATGGTTGAA
GACACTGGCG CATATAAGTT CATCAACGAA AAAACTCGTG CTATTTATGC ACAGTTTCAT
TTAGATTTTG ATGACATTAC TGCAGTGGTT GGTGGGCGTT ATATTCAAAC AGAATTAGAA
TCTAGTATTG TTGATTCTGT AGACAGTAAC GGTAACAAAA TCCTCAATAC TGGTAGTAAC
GATTATTCAG ACTTTTTACC TAGCTTGAAT GTCACTTATA CTTTATCTGA AGAAACCTTA
ATGCGTTTTG CAGCAGCTAA AGTGATGCGT CGTGCTGATT TTGATGAATT AAGTCCTGCA
TTATCAATCG ATAACTCTTT AGTTACCGGT ACTCAAGGTT CATATCAATT AGAACCGTAT
CGTGTTACTC AATATGACCT TTCTGTAGAG CATTACTTCG GCGACGGTGG TTTACTTTCT
GCGGCAATTT TCTATAAAGA TGTTAACTCG TTTACACAAA CCGACAGTAG CTGTTTAGCT
GATTCAAGCA CGATAAGCGG ACAAAATACC ACCCAGTGGA ACAATATATG TTTACTTAAC
ACTGCTGGTC AAAGCCAAGG TGACATTGTT AATGCCACTC AAGACCAAGG TTTAGCATAT
GTTGATGCTC AAAAAGCGGC AGGTCGCACC GGTATCGTCA TCGACACTGA TGTAAATGGT
GGTAGCGGTG AAGTCAGAGG CTTGGAATTA GGTTACCAGC AACAGTTCAG CTTTTTACCA
GGTATTTGGG CAGGTTTAGG TGTTAACGCA AACTATACCT ATGCAGATAG TCAGCAACCC
GATGGCAATC CATTATTGAA TATTTCTAAG CACACCGCTA ACACTCAAGT TTACTGGGAA
GGTGAAGAAG TTCAGTTACG TTTAGCCTAC AACTGGCGTG ACCGTTATTT AGACGACCAA
AGCACCAAGC GTGTACAAAC TGTTGGCGCT TTAGGTTATA ACGTTTTCAA CCAGAATGAC
CCTTCAGCTG ACAACTACGA CCCTACCGTG GGTAACAGCT ACCGAGAAGA TAGAGGCCAA
CTTGATTTTT CAGTTAGTTG GGATATCAAC GAAAACTTCA CTGTTGTAGC CAATGCGGTA
AACCTAACGG GTGAACCAAT TGTTTATACT ACTGAGCTAG ATTCTATCTG GGCTTACAGT
GAAGCAGACC GTCGCTACAC TCTTGGTGTT AGAGCTAAGT TTTAA
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| Protein sequence | MKLNKIGAMF SGAKNKANNI TIFGATLTAM LTMPALAAEP TAQTEAEKVK ASEIEVIAVR
GIFGSLKAAN LLKRTDERIV DVIVAEDIGK LPDNNIAEAL QRITGVSIES DFGVGESVTI
RGVSENLILL NGRSTAGPGR GGISLDDFPA SFLKTVEVIK SPTPEMIEGA LGGTVNMQTV
RPLELSEPLV AITLDGEYAD KTENVAPNFT AAIGNSWDLG DAGTFGAAAN VSYQDRELRR
DEYFNKVDLQ DDIDLDGDGT VDVSGGPNGK YLRRTESTVE QKTEQRERTA FGLSLQWAPT
SEELNFYVDM NSTKLDGGQA AYSILDVGGT VVPRSDSYYD GNGQLQNYDL SGVLVIPKTW
SDFTTSETTS HAIGGEWNIT DNIEISGEYS ISKSEERQTA SEFNLRPIER TDPTLDLVTH
TSTASMTNGG GIPSYVFEDT GMLTNPDNLV FREFYHKTLD TDNEEQALRF DFKIHDVGVD
FISAIKTGVR FTDRDYSSNR FDLKPNGNTL KDSYKKAKNA DGLYSPTWID NPIISDSFTT
INASNSFDQT GMSGQNDLLT YNVYDAEKLQ DAEATYLLAQ QMLAGTTYAM NGTLADNMVE
DTGAYKFINE KTRAIYAQFH LDFDDITAVV GGRYIQTELE SSIVDSVDSN GNKILNTGSN
DYSDFLPSLN VTYTLSEETL MRFAAAKVMR RADFDELSPA LSIDNSLVTG TQGSYQLEPY
RVTQYDLSVE HYFGDGGLLS AAIFYKDVNS FTQTDSSCLA DSSTISGQNT TQWNNICLLN
TAGQSQGDIV NATQDQGLAY VDAQKAAGRT GIVIDTDVNG GSGEVRGLEL GYQQQFSFLP
GIWAGLGVNA NYTYADSQQP DGNPLLNISK HTANTQVYWE GEEVQLRLAY NWRDRYLDDQ
STKRVQTVGA LGYNVFNQND PSADNYDPTV GNSYREDRGQ LDFSVSWDIN ENFTVVANAV
NLTGEPIVYT TELDSIWAYS EADRRYTLGV RAKF
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