| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2074 |
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| Symbol | |
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| ID | 4278986 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 2458647 |
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| End bp | 2461385 |
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| Gene Length | 2739 bp |
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| Protein Length | 912 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 638134863 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_750758 |
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| Protein GI | 114563245 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain
[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.136005 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCGAAAA AACCGACTGC CTATACAAAT GTTTTTCTTT GTATATTGTT ATTATTGTCA
TTCGCTAACT TTACACGTGC TGATGTTGTC GAGATGACCG CTGTTAGGCC AATAACCCTT
AATGAACATG AGCAACAATG GCTGAGCGAA CATCAACCAA TTCGTGTGGG TGTGGATGGT
TATTTCCCTC CTTATACTTA TATCAATGAA AACGATCAAA TTGTTGGAAT GGCAGTTGAT
ACTTTGTTGT TGATTGGGCA AAAGTTAGGC ATAGAGTTTG TCATAAATGA TGAACATCGC
TGGCCAGATA TCGTCAAAAA TCTGCAGCAA AAAGAGATTG ATATAGTGTT AACCATGGTC
AACACACCTG AGCGCGAAAA CCAATTTTTG TTCACTAGTC CAATTGTTTA TAAATCGCTG
GTGATTATTG GTAAAAATAA TAACCATCAA ATTAATAACC GCAGTCATAT TGCTAATAAA
ACCATTGCGA TAGTGAAGGA TTATCAATAT TCCGATAAAC TTATTAAAGA GTTCCCCAGC
GTAACGCCAT TTGTGGTTGA TAACATGCGT GAAGCAATGG AAGCTGTGCA GGCTAATCAA
GCCGATGCGG CAATCACCTT TTTAGCTGCA GCAAATTATT ATCAGTTAAA GTACTCATTT
TCTGATTTGA AATTCTTCGC CTTTTACGAA AAAAACAATG CTAATGAATC CATTGCAGTC
AGACAAGACT TTCCTATTTT AGCCAGTATT ATGCAGAAAG GGTTGAGCTC GTTGAGCTCT
ACTGAAAAAA TTGCCATTAA TGAAGCTTGG GGGGCAAATA TTACGCTGCC GAAAGATAAC
CAAGATTTGA TTGAGTTTGC GGCGGTGGCA GGTGTATTAA TTTTGTTGCT TAGTGTGTGG
ATTTTGCAAG CTAGACGGAA TAATCAAGCC TTAACCATTG CTAATATTAA TACTGCAAAT
GCCAATATGG CATTAAACGA ATTAAAAAAT AATCTTGAAA AAAACGTCTT GGAACGGACG
CTTCAGCTTA CCATTAGCGA AAATAGATAC CGTGGTTTGG TTGAGTCGTT AGAAGATGAA
TACATTTTTT ATCAGCACGA TACCGATGGT TTTGTACAAT ATGTCAGTCC TTCAGTGACT
CATATTTTAG GGCTCACTAT TACTGGATTT GGCGAATATT ATTATAAATT GTTAACTGAC
AATCCGAAAA ATCAACTGAT CTCAGGATAT ATCCAACGCA TTATTAACGG AGAGAAATTA
GCGCCATTTG AGATAGAAAT ATTTGATACG AATGGCGTTA TTCATACCTT TGAGGTGCTT
GAACGACCTA TGTATGATGA TGAAGGTGAA TGCATTGGTT GCGAAGGTAT TGCCCACGAT
GTGACATCGC GTAAACAGCA ACAAGATATG TTGTATCAGC TGTCGCACTA TGACGACTTA
ACGGGCTTAA TTAACCGTTA TTTTTTTAAG ATTTTACTCG ACGAAAATAT TCAAATATGT
CTGCAAAATC AACAGCCGCT GGCATTACTA TTTTTAGATC TTACTCGTTT TAAAATTATT
AATGATAACT TTGGACATAG TGCTGGCGAC TATATTCTAC AGCAGGCGGC TACACGCATT
AGTACTACGC TAAATGGAAC CTTCACAGTG TCACGTTTTG GCGGTGATAA ATTTTGTATT
GCATTACCCA ATAAAGCTGC CGATGAAGCA AATGCCATTG CGACTGAATT AGTTGAAGTA
TTTCAACAAC ATTTTGAGTT TTTAGAACAA ACCATTATTT TAGGTTGTCG TGTGGGTATT
AGTCTTTTTC CTGAAGATGG CAAAGATGCT GAAGCGATAT TGAACCAAGC AGATTCAGCT
TTGTATGAAG CGAAAAAAAG ACCGTTTGGG GTGGCATTTT GTAACAAACA ACAAGCGATA
CATAATAAAC GCCGTCTCAT TATTGAGCAG GGGTTACGTA AAGCGTTAGC TGAACCTGTT
ATTGAACATT ATCAATTGTT TGCGGTATAT CAGCCTTTAA TCCTTTTACC AAGCCAAGGC
CTAGGTGGAT TTGAAGCGTT GATGCGTTGG GACCATCCAG ACTTTGGGCT TATCTCTCCG
GCTGAATTTA TCCCTATTGC CGAAAATACT GGTTTAATCT TTGAATTAAG CCGTTGGATG
CTCAAAACGG TATGCCAACA GTTAGTGAAA TGGCATGAGC AAGGTTTTGA CTTCAAAAGG
GTATCAGTCA ATTTGTCTGC GCTAGAATTG ATGAGCATTA ACTTAGCTGA CGATTTACTG
GCTGTTATTA CAGATATTGG TGCCGAACCT AAGTGGCTTA AGTTTGAAAT CACAGAAACC
GCTTTGATGG CCATTCCTGA ACAATCAATT GATATTTTAC AAAAGCTTAT CCAAGCTGAT
ATTCATGTGG CTATCGACGA CTTTGGCACG GGCTACTCAT CACTTGCTTA TCTTAAATCA
CTGCCAGCAA CAATGTTAAA AATTGACCAG TCATTTATCT GTAATCTAAT TCATTCAGCT
GAAGATCAAG CCGTGGTAAA AGCGGTGATA AACATGGCGC ATTCATTAGG TAAATGTGTC
ACGGCTGAGG GAGTTGAATT ACAAGACCAA TTAGACTTTT TGATTGAACA TCATTGCGAT
GTTGCACAGG GATATTATTT TTCAAAACCG ATGAATGCTG ATGATGCTTA TCATAAATAC
GCTGTAATCA TTAACTCAAT GGATGATGGT GCGCATTAA
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| Protein sequence | MPKKPTAYTN VFLCILLLLS FANFTRADVV EMTAVRPITL NEHEQQWLSE HQPIRVGVDG
YFPPYTYINE NDQIVGMAVD TLLLIGQKLG IEFVINDEHR WPDIVKNLQQ KEIDIVLTMV
NTPERENQFL FTSPIVYKSL VIIGKNNNHQ INNRSHIANK TIAIVKDYQY SDKLIKEFPS
VTPFVVDNMR EAMEAVQANQ ADAAITFLAA ANYYQLKYSF SDLKFFAFYE KNNANESIAV
RQDFPILASI MQKGLSSLSS TEKIAINEAW GANITLPKDN QDLIEFAAVA GVLILLLSVW
ILQARRNNQA LTIANINTAN ANMALNELKN NLEKNVLERT LQLTISENRY RGLVESLEDE
YIFYQHDTDG FVQYVSPSVT HILGLTITGF GEYYYKLLTD NPKNQLISGY IQRIINGEKL
APFEIEIFDT NGVIHTFEVL ERPMYDDEGE CIGCEGIAHD VTSRKQQQDM LYQLSHYDDL
TGLINRYFFK ILLDENIQIC LQNQQPLALL FLDLTRFKII NDNFGHSAGD YILQQAATRI
STTLNGTFTV SRFGGDKFCI ALPNKAADEA NAIATELVEV FQQHFEFLEQ TIILGCRVGI
SLFPEDGKDA EAILNQADSA LYEAKKRPFG VAFCNKQQAI HNKRRLIIEQ GLRKALAEPV
IEHYQLFAVY QPLILLPSQG LGGFEALMRW DHPDFGLISP AEFIPIAENT GLIFELSRWM
LKTVCQQLVK WHEQGFDFKR VSVNLSALEL MSINLADDLL AVITDIGAEP KWLKFEITET
ALMAIPEQSI DILQKLIQAD IHVAIDDFGT GYSSLAYLKS LPATMLKIDQ SFICNLIHSA
EDQAVVKAVI NMAHSLGKCV TAEGVELQDQ LDFLIEHHCD VAQGYYFSKP MNADDAYHKY
AVIINSMDDG AH
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