Gene Sfri_2062 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_2062 
Symbol 
ID4278974 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp2444014 
End bp2445684 
Gene Length1671 bp 
Protein Length556 aa 
Translation table11 
GC content42% 
IMG OID638134851 
ProductAMP-dependent synthetase and ligase 
Protein accessionYP_750746 
Protein GI114563233 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAAAGGA TTTGGCTAGA AAAGAGTTAT CCGCCTGGGG TTGAGTTTGA AATTGATCCA 
GATAAATACA ACTCGTTGGC AGATTTGTTT TTAAAATATA CCAAGTTATA TGCCACTAAT
ACGGCGTTTA TCAACATGGA TGTCAGCATT ACTTATCAAC AGCTTGCCCA GCAAGCGACA
GACTTTGCAG CCTATTTACA GCAAGACTTA GGGCTAGTGA AAGGCGATAA GTTTGCCATC
ATGATCCCCA ATACACTGCA ATATCCTATC GCATTATTTG GTGCACTTAT CGCAGGCTTA
ACTGTGGTGA ATGTTAATCC ACTGTATACC CCACGTGAAT TAGAACATCA ATTAAAAGAC
TCTGGCACTA AAGCTATTTT AATTTTAGAA AACTTTGCCC ATGTATTGCA GGCAGTCATT
GATAAAACCG ATGTTAAACA TGTTATCACC ACTGGTGTGG GTGACCGATT AGGCCTGATT
AAAGGCGCAT TAGTTAACGG CGCGATTAAG CACGTGAAGA AATTGGTGCC AGCGTTCGAT
TTACCTAATG CGGTTAAATT TAATGACGCC ATGGCAAAAG GCAGCAAACA AACCTTTAAG
CCAGTTGATG TTATCGGTTC TGACTTAGCC TTTTTACAAT ACACTGGCGG CACTACAGGC
CCTTCAAAAG GTGCCATGCT GACTCACCGT AATATGGTTG CCAACCTTGA GCAGTCCAAT
GCGGTTACCA AGAACGTTTA TGAAATAGGC AAAGAGCTGA TTATCACTGC ATTGCCGCTT
TATCATATCT ACGCACTAAC CTCTAATTGC TTAGCCTTCT TGCCATTTGG TGGCACTAAC
TTATTAATCA CCAACCCAAG AGACATGGCC GGCTTTGTTA AAGAACTGGC TAAATATCGC
TTTACCGTGA TTACGGGTGT GAACACCTTG TTTAACGGAC TGTTGAATAC TCCAGGGTTT
GATCAACTTG ATTTCAGTGC ATTAAAAATG GGTTTTGGCG GCGGAATGTC GGTGCAAAGG
CCGGTTGCAG AACATTGGGA ACGAGTGACT AAAAGTCGTT TACTTGAAGG CTATGGATTA
ACAGAATGTG CGCCATTAGT GACAATGAGC CCTTATAACC AAAAAAGCTA CAACGGCTCG
ATTGGCTTAC CGGCATCATC AACCGATATT CGTTTAGTGG GTGCCGATGG TGAAGATGTT
GCATTAGGTG AACCTGGTGA AATGTGGGTT AAAGGCCCGC AAGTAATGAA AGGCTATTAC
AATCGCCAAA AAGCCACCGA TGAAGTATTA ATCGATGGTT GGTTGGCAAC CGGTGACATT
GCCACTATGG ACGAAAATGG TTTCTTTAAG ATTGTTGACC GTAAAAAAGA CATGATTAAC
GTGTCTGGTT TTAATGTGTT CCCTAACGAA ATTGAAGAAG TGATAGTGTC TCATGAAGGC
GTACTTGAAG CCGCTGCGGT GGGTGTATCT TGCGATATTA CTGGCGAGCG CGTCAAAGTG
TATATCGTGC GTAAGGACCC AACATTAACA GAACAAGATA TTTTTGATCA CTGCAACAAA
ATGCTGACTA ACTATAAACG TCCTAAAATC ATTGAGTTTA TGAATGAATT GCCTAAAAGC
AATGTGGGTA AAGTATTGCG TAAAGATCTT CGGAATCAGG CACAAGCATA A
 
Protein sequence
MERIWLEKSY PPGVEFEIDP DKYNSLADLF LKYTKLYATN TAFINMDVSI TYQQLAQQAT 
DFAAYLQQDL GLVKGDKFAI MIPNTLQYPI ALFGALIAGL TVVNVNPLYT PRELEHQLKD
SGTKAILILE NFAHVLQAVI DKTDVKHVIT TGVGDRLGLI KGALVNGAIK HVKKLVPAFD
LPNAVKFNDA MAKGSKQTFK PVDVIGSDLA FLQYTGGTTG PSKGAMLTHR NMVANLEQSN
AVTKNVYEIG KELIITALPL YHIYALTSNC LAFLPFGGTN LLITNPRDMA GFVKELAKYR
FTVITGVNTL FNGLLNTPGF DQLDFSALKM GFGGGMSVQR PVAEHWERVT KSRLLEGYGL
TECAPLVTMS PYNQKSYNGS IGLPASSTDI RLVGADGEDV ALGEPGEMWV KGPQVMKGYY
NRQKATDEVL IDGWLATGDI ATMDENGFFK IVDRKKDMIN VSGFNVFPNE IEEVIVSHEG
VLEAAAVGVS CDITGERVKV YIVRKDPTLT EQDIFDHCNK MLTNYKRPKI IEFMNELPKS
NVGKVLRKDL RNQAQA