| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2028 |
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| Symbol | |
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| ID | 4278940 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 2399741 |
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| End bp | 2401669 |
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| Gene Length | 1929 bp |
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| Protein Length | 642 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 638134815 |
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| Product | threonyl-tRNA synthetase |
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| Protein accession | YP_750712 |
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| Protein GI | 114563199 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0441] Threonyl-tRNA synthetase |
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| TIGRFAM ID | [TIGR00418] threonyl-tRNA synthetase |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.455146 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCTATTA TTACATTGCC TGATGGCAGC AAACGTGAGT TTGCCAATCC TGTATCGACT
CTTGATGTTG CATTAGACAT CGGCCCTGGT TTAGCAAAAG CGTGTATTGC TGGCCGTGTA
AACGGTGAAT TAAAAGATGC AACTGACTTA ATCACTGCAG ACTCAGAATT AGCTATCATC
ACGGCCAAAG ACGAAGAGGG TGTTGAAATC CTTCGCCATT CTTGTGCGCA TTTATTAGGT
CACGCGATCA AGCAAATGTG GCCAGAAACC AAAATGGCAA TCGGCCCGGT TATCGACAAC
GGTTTTTATT ACGACATCGA CTTAGACCAT AAGCTGACGC ATGAAGACAT CGAAGCCCTA
GAAAAGCGTA TGCTTGCATT AGCCAAAACT AACTACGATG TGGTTAAAAA GGTTGTATCT
TGGCAAGAGG CCCGCGATGC ATTTGATGGT CGTGGTGAAG AATACAAAAT TGCTATTTTA
GATGAAAACA TCAGTAAAGA CGCAACACCA GCGCTTTATC ACCACGAAGA ATACATCGAT
ATGTGTCGTG GTCCTCATGT GCCAAACATG CGTTTTTGTC AGAACTTTAA GTTAATGAGC
GTTGCTGGTG CATATTGGCG CGGTAACTCT GATAACAAAA TGCTGCAACG TGTATACGGA
ACAGCATGGG CCGATAAAAA AGCCCTTAAA ACTCATTTAG TGCGTTTAGA AGAAGCGGCT
AAGCGTGATC ACCGTAAAAT TGGTAAACAA TTAGATTTGT ACCATATGCA AGAAGAAGCA
CCAGGAATGG TGTTTTGGCA TAACGATGGT TGGAGCATAT TTTTAGAACT TGAGAAATTC
ATTCGTCAAA AGCTAGGTCA ATACACTTAT CAAGAAGTGA AAGGCCCACT AATGATGGAT
CGTGTGTTAT GGGAACGTTC TGGTCACTGG GATAAATACG CAGAAGCCAT GTTCACTACT
AATAGCGAAA ACCGTGAATA CGCGATCAAG CCAATGAACT GTCCTGGTCA TGTACAGATT
TTCAACCAAG GGTTAAAATC TTATCGTGAC TTACCATTAC GTATGGCAGA GTTTGGTTGC
TGTCATCGTA ACGAACCATC TGGTTCACTT CACGGTTTAA TGCGCGTGCG TGGTTTTACT
CAAGACGACG CTCATGTTTT CTGTACTGAT GATCAAGTAC AAGAAGAAGT CAGTGCATGT
ATCCAAATGG TATATGACAC ATACGCTACA TTTGGTTTCG ATAATATCGT AGTTAAACTG
TCAACTCGCC CTGAAAAGCG TATTGGCGAC GACGATATGT GGGACCGAGC TGAAGACGCT
TTAAAGCAAG CTCTTGCCAA TAATAATATT AAATATGAAA TATTACCGGG TGAAGGCGCG
TTTTATGGTC CAAAAATCGA ATTTACTTTG CATGACTGTT TAGATCGTGC ATGGCAATGT
GGTACAGTAC AACTCGATTA TGCATTACCG ACTCGTTTGG GTGCCACTTA TGTCGCAGAA
GACAACAGTC GCCAGACGCC AGTAATGATC CATCGTGCTA TTTTAGGTTC TTTAGAACGT
TTCATAGGTA TATTGATAGA AGAATACGCC GGTAAATTCC CAACTTGGCT TGCTCCAATG
CAAGTAGTTG TAATGAACAT TACCGACAAA CAAGCTGATT ATGTTGAAGA AATCGTTAAA
TTCTTCAAAG AACAGGGTAT TCGAGCATCT TTTGACTTGA GGAATGAGAA AATAGGCTTT
AAAATACGCG AACACACCCT AAGACGTGTG CCTTATTTAT TGGTCGTTGG TGATCAAGAA
ATGGAAAATA AGGAAGTAGC GGTGCGTACA CGTGACGGTA TCGATTTAGG CAAGTTAAAA
CTAGAAGATT TCGCCGCGAT GATACGTCAA CAGATTTCGC TCCGTAGTCT CAAATTGTTG
GAGGAATAG
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| Protein sequence | MPIITLPDGS KREFANPVST LDVALDIGPG LAKACIAGRV NGELKDATDL ITADSELAII
TAKDEEGVEI LRHSCAHLLG HAIKQMWPET KMAIGPVIDN GFYYDIDLDH KLTHEDIEAL
EKRMLALAKT NYDVVKKVVS WQEARDAFDG RGEEYKIAIL DENISKDATP ALYHHEEYID
MCRGPHVPNM RFCQNFKLMS VAGAYWRGNS DNKMLQRVYG TAWADKKALK THLVRLEEAA
KRDHRKIGKQ LDLYHMQEEA PGMVFWHNDG WSIFLELEKF IRQKLGQYTY QEVKGPLMMD
RVLWERSGHW DKYAEAMFTT NSENREYAIK PMNCPGHVQI FNQGLKSYRD LPLRMAEFGC
CHRNEPSGSL HGLMRVRGFT QDDAHVFCTD DQVQEEVSAC IQMVYDTYAT FGFDNIVVKL
STRPEKRIGD DDMWDRAEDA LKQALANNNI KYEILPGEGA FYGPKIEFTL HDCLDRAWQC
GTVQLDYALP TRLGATYVAE DNSRQTPVMI HRAILGSLER FIGILIEEYA GKFPTWLAPM
QVVVMNITDK QADYVEEIVK FFKEQGIRAS FDLRNEKIGF KIREHTLRRV PYLLVVGDQE
MENKEVAVRT RDGIDLGKLK LEDFAAMIRQ QISLRSLKLL EE
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