Gene Sfri_2017 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_2017 
Symbol 
ID4278929 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand+ 
Start bp2390001 
End bp2390690 
Gene Length690 bp 
Protein Length229 aa 
Translation table11 
GC content43% 
IMG OID638134804 
Producthypothetical protein 
Protein accessionYP_750701 
Protein GI114563188 
COG category[S] Function unknown 
COG ID[COG2836] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATTGAAT ATAATGTTGG TGGTGCATTT ATTGTTGGTT TAATGGGCGC TGCACATTGT 
TTTGGCATGT GTGGCGGATT AATTGGGGCT TTTTCGGCAA ACATACCCAC CAATGGACAG 
ACACGTTTAG GCACGCAACT GACATTTCTG TGTGGCTACA ATTTTGGACG CATCTTTAGT 
TACACTGTGG CAGGGGCCAT TGTCGGTGGT AGTGTCTCCG CTCTTGGTCA TTTATTTGAT 
GTTGATAGTT ATTTAATTTT TCTTCGCATT TTTGCGGGCA CCATGATGAT TCTTACTGGC 
CTTTATATTG CTCAGATATG GTTTGGAATC GTTCATATTG AAAAAGTTGG AAAAGTGTTG 
TGGCGATACT TACAACCTTT AACACGTAAA TTTATCCCCA TTACTCATCC ATTCCAAGCC 
GTTATGGCGG GTATGGTATG GGGCTGGCTC CCCTGCGGCC TGGTGTACAG TACATTAACT 
TGGTCTGTTG CATCTGGAAG TGCATTACAA GGTGGCTTGA TTATGTTCGC TTTTGGTTTA 
GGTACTTTAC CCGCTTTATT TGCGGCGGGA TTAGCAGCTA AAACCTTGGC CCAATGGGTA 
CAAAAACGAG CAGTGAGATT ATTCAGTGGC GGACTTTTGG TGTTGTTTGG ATTACAAACG 
CTTTACATTG CTTTTAATCA ACTCACCTAG
 
Protein sequence
MIEYNVGGAF IVGLMGAAHC FGMCGGLIGA FSANIPTNGQ TRLGTQLTFL CGYNFGRIFS 
YTVAGAIVGG SVSALGHLFD VDSYLIFLRI FAGTMMILTG LYIAQIWFGI VHIEKVGKVL 
WRYLQPLTRK FIPITHPFQA VMAGMVWGWL PCGLVYSTLT WSVASGSALQ GGLIMFAFGL 
GTLPALFAAG LAAKTLAQWV QKRAVRLFSG GLLVLFGLQT LYIAFNQLT