| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2015 |
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| Symbol | |
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| ID | 4278927 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 2387291 |
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| End bp | 2389684 |
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| Gene Length | 2394 bp |
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| Protein Length | 797 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 638134802 |
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| Product | heavy metal translocating P-type ATPase |
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| Protein accession | YP_750699 |
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| Protein GI | 114563186 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG2217] Cation transport ATPase |
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| TIGRFAM ID | [TIGR01494] ATPase, P-type (transporting), HAD superfamily, subfamily IC
[TIGR01511] copper-(or silver)-translocating P-type ATPase
[TIGR01525] heavy metal translocating P-type ATPase |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.467794 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACATCTT GCTTTCATTG CAATGAGCCG GTGCTAACGG GTGAACAGTT TACAACCGTG
ATTAATGGGC AACCACAACC TATGTGCTGC CCAGGTTGTC AGGCGGTTTC GCAAGCGATT
ATGGATGCTG GCTTAAGCAG CTATTATCAA TTTCGTAGTG AGCCAGGCAA TCGCCAAACT
GCTTTGATAC CTGAGCAATT GTCGCAGTAC AGTGCTTATG ATTTACCTGA AGTACAGCAA
GACTTTGTTC ATAAACAAGG GGCTATTGAT TCGACCTCTT TGTCTATCGA CGGCATTACC
TGCGCCGCTT GTGCATGGTT AATTGAGCAT AAACTCAAAC CCATTGCTGG TGTCACCAAT
GTATTGGTTA ACTCAACTAC ACAACGCGCA TTGGTAAGTT GGGATAGTCA AATTATTCAG
CTCAGTGAAA TTTTGCAGAT TATCAGTAAA ATTGGCTATC AAGCAGCACC TTATCAAGTT
GATGAACAAG AAAAACAATC AAAAGCAGAC AGTCGTAAAT TTTTACTTCG TTTAGGACTT
GCAGGCTTTG CCACCATGCA GGTGATGATG TTTGCCCTCG CCTTATATAC TGGATACTTT
ACCGACCTAG ATGTCGAGTT TCGCGATTAT TTCCGCTGGG TGAGTTTAAT TTTTGCCGCT
CCAGTGGTGT TGTATTCTGC TCAACCCTTT TATTTCAGTG CGCTTCGTAG TTTATTAAGT
GGCAAGCTTA ATATGGATGT CTCTGTCTCC ATCGCTATTT TAGGTGCTTA TATCGCCAGT
TGTGTCGCGA CTATTCAGGC CAATGGCGAA GTGTATTTTG AATCTGTTTC CATGTTTACC
TTCTTCTTAT TACTCGGCCG CTATTTTGAA CAAACAGCGA GACAAAAAGC CTCTGTTAGT
TCGAGTAATT TACATAAACT GGTTCCTTTA ACCGCACATT TATACCGTGA TGGCGAGATT
ACTGAGATTG CTGCTAAGCA GCTGGTCATT GGCGATATTA TTTTGGTCAA ACCAGGTGAA
GTCATTGCAG CAGATGCTGA GGTGGTTAAT GGCCTATCAA GTGTCAATGA AGCCATGCTA
ACCGGCGAAC AAATGCCAAT AGGTAAACAG ATTAATGATA CCGTTTATGC TGGAACCATT
AATGTCGAAC AACCTCTGCA AGTTAAAGTC ACTGCGTTAG GCCAAGATCA ACTCGTGGCT
GAAATTATTC GCTTACAAGA ACTTGCATCA AACAATAAAC CAGCTATTGC TTTGGTGGCC
GACCGTTTAG CACGTTATTT TTCCGCAACG ATATTATCGA TTGCAGCGCT AACCTATATT
GTTTGGTTGT TTATTTCTGC CGATGATGCT TTTTGGATTA CCTTGTCGGT ATTAGTTGCC
ACTTGTCCAT GTGCCCTCGC CCTTGCTACG CCGACAGCTG TGACATGTGC AACGGCAATT
TTTACCAAGT TAGGCGTTAT TCCGCGCAAA GCCGGCATTT TTGAAAAACT GACTAAAATT
GATCATGTGG TGTTTGATAA AACAGGAACC TTAACCTGCG GTCAATTATC GATTGGTGAA
GTGCAAACCT TTGGCGAATA CTCATCAGAG CAAGTGTTAT CGTTGGCTGC AGCAATTGAG
CAAGGCTCTT TACATCCCAT CGCACTAGCA TTTAAACCTT TTTATGATAA TAAACACCTT
GTCGAAAATG TTGATCATCA TATAGGTTTA GGCATTCGCG CGAGTATCGG TCAACTGCAA
GTTTGTATTG GTACGGCTCA ATTTGTTACC CCAGACGCAA ATGTAGCGGC TTCACAGGCA
ATTGAAACCC AGTGGATATA TCTGTCTGTC AATAACAAAT TGATCGCTAA AATTGAAATG
CTTGATGAGT TAAGAGTCGA CAGTTTAGCC ACCGTGAATG CGTTAAAAGC GGCCAATATA
AAACTCAGTA TTGCCAGTGG TGATAATTCG GGACATGTTG AGTTTTTGGC AAGTAAACTC
GGTATTTCAG ATGTACATTC AGGTTTATCG CCGCAAGATA AGTTAGCGTT AGTGAATCAA
TTACAACAAC AAGCCAATGT GGCTATGTTT GGAGATGGCA TTAATGATGC GCCAGTACTT
GCCGGAGCAA ACTTGTCTGT TGCAATGGGA AGCGGCAGTG CTATTGCAAA AAATAGTGCT
GACTTAATTT TACTAGGCGA TCACTTGTCA CGATTTAATG ATGCTATTGA TGTCGCTAAG
CAAACACAGC GCATTATTCA TCAAAATTTG TTATGGGCTT TTGCTTATAA CATAGTTATT
TTGCCATTAG CAGTTACCGG ACATGTAGCC CCGTATATTG CCGCGATTGG CATGTCGGTT
AGTTCACTGA TTGTGGTGAG CAATAGTTTA CGCCTTCTTA GGATAAAATT ATGA
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| Protein sequence | MTSCFHCNEP VLTGEQFTTV INGQPQPMCC PGCQAVSQAI MDAGLSSYYQ FRSEPGNRQT
ALIPEQLSQY SAYDLPEVQQ DFVHKQGAID STSLSIDGIT CAACAWLIEH KLKPIAGVTN
VLVNSTTQRA LVSWDSQIIQ LSEILQIISK IGYQAAPYQV DEQEKQSKAD SRKFLLRLGL
AGFATMQVMM FALALYTGYF TDLDVEFRDY FRWVSLIFAA PVVLYSAQPF YFSALRSLLS
GKLNMDVSVS IAILGAYIAS CVATIQANGE VYFESVSMFT FFLLLGRYFE QTARQKASVS
SSNLHKLVPL TAHLYRDGEI TEIAAKQLVI GDIILVKPGE VIAADAEVVN GLSSVNEAML
TGEQMPIGKQ INDTVYAGTI NVEQPLQVKV TALGQDQLVA EIIRLQELAS NNKPAIALVA
DRLARYFSAT ILSIAALTYI VWLFISADDA FWITLSVLVA TCPCALALAT PTAVTCATAI
FTKLGVIPRK AGIFEKLTKI DHVVFDKTGT LTCGQLSIGE VQTFGEYSSE QVLSLAAAIE
QGSLHPIALA FKPFYDNKHL VENVDHHIGL GIRASIGQLQ VCIGTAQFVT PDANVAASQA
IETQWIYLSV NNKLIAKIEM LDELRVDSLA TVNALKAANI KLSIASGDNS GHVEFLASKL
GISDVHSGLS PQDKLALVNQ LQQQANVAMF GDGINDAPVL AGANLSVAMG SGSAIAKNSA
DLILLGDHLS RFNDAIDVAK QTQRIIHQNL LWAFAYNIVI LPLAVTGHVA PYIAAIGMSV
SSLIVVSNSL RLLRIKL
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