| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2007 |
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| Symbol | |
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| ID | 4278919 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 2380574 |
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| End bp | 2381881 |
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| Gene Length | 1308 bp |
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| Protein Length | 435 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 638134794 |
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| Product | phage integrase family protein |
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| Protein accession | YP_750691 |
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| Protein GI | 114563178 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4974] Site-specific recombinase XerD |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.000769024 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCAAAA ATATCACTGA TGAACTGCCA CCAGTATTAC CACTATTTGA TGCTGCAGAG
CATGTATTAC AAGGTAATGC GTCTGTTAAT CAGTATATTA CCCGAATTTC AATCGATAAA
GTTGCCGATG CAGGACTCAT TATAGAGCAC TGTGCCGATT GGTTATTTGA GCAAAAACAG
TCAGAAAACA ACTATAAAGC CTACCGCAGT GAGTTAACCA CATTTCTGCA TTGGTGTTTT
GACGTAGTCG CATTATCGCC AATTGCGGTA ACGCGTAAAG ACATCGCCAA ATACATCGAT
TACTGCCAAT CGCCGCCACA AACACTAATA GGCTATTTCA ATGTAGCGCA ATTCAAACTC
GATAAAGCCA CTGGGGAGCG TTCACCAAAC CCACAATGGC GGCCATTTAT TGGTAAAAAG
CACCTGGGGA AATGCCTACC ATATCAACTG AGTGATAATG CGCTGAAGAC TAAAATAGCA
ATATTATCAT CATTTTATGG CTACCTAATT AGTGAAGAAT ATACCGAGCG TAACCCGGCT
CAGTTATGGT TAAAACACAG TCGTTTTGCT ATTAAACGTA AATTTACCAT CGACGAAGAC
AATAACCATC ATGCCTTTAC AGAGTTACAA TGGTCTTATG TTATAAGCAC CGTAAGCCAG
CTTGCAGACA CTCAACCAGA GCAGCATCAA CGCAGTTTAT TCCTCATCAT ACTATTATAT
AGCTGCTACT TACGAATCTC CGAGATCAGT GCACGTGCAG GTTACGCGCC CATCATGAGC
CAGTTTAGAC AAGATCCACA TTCTGGTGTC TGGTATTTTC ACGTACCATT TTCTAAAAGC
GGCAAAGCAC GTAATATTGC CATATCAAAA GCATTGCTGG CTGGACTAGT TGATTATCGA
CGTTATCTGC GTCTCAGTGA TTTACCCAAC ATCAACGATC AACATCCTAT ATTTGTCCGT
CACAAAGCCG CAGCCCATGG ACGTGAATCT GGAATCATCA ACGCCAATCT TGGTATTCGG
CACATACGTG ACGAAATAGA TAAACTGATT AACTTAGCTG CAGACAATGC TGCTAAAGAT
GGTTTTGAAC ACGACAGCCA ACTTATGCGA AAACTCAGTG CGCATAATAT TCGTCACACT
GGGATCACGC ATGACATCAA TATCAACCGT CGACCATTGT CGCATGTCCA GGCCGATGCC
GGTCATGAGA GCATCGACAC AACATCACAG TATTTACACA CCACACAAAC TGAACGACAT
CAAAGCGCAT TCAATAAACC GTTAAATCAT CTTGCTGAGA TTAAATAA
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| Protein sequence | MTKNITDELP PVLPLFDAAE HVLQGNASVN QYITRISIDK VADAGLIIEH CADWLFEQKQ
SENNYKAYRS ELTTFLHWCF DVVALSPIAV TRKDIAKYID YCQSPPQTLI GYFNVAQFKL
DKATGERSPN PQWRPFIGKK HLGKCLPYQL SDNALKTKIA ILSSFYGYLI SEEYTERNPA
QLWLKHSRFA IKRKFTIDED NNHHAFTELQ WSYVISTVSQ LADTQPEQHQ RSLFLIILLY
SCYLRISEIS ARAGYAPIMS QFRQDPHSGV WYFHVPFSKS GKARNIAISK ALLAGLVDYR
RYLRLSDLPN INDQHPIFVR HKAAAHGRES GIINANLGIR HIRDEIDKLI NLAADNAAKD
GFEHDSQLMR KLSAHNIRHT GITHDININR RPLSHVQADA GHESIDTTSQ YLHTTQTERH
QSAFNKPLNH LAEIK
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