| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1994 |
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| Symbol | |
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| ID | 4278906 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 2364320 |
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| End bp | 2366812 |
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| Gene Length | 2493 bp |
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| Protein Length | 830 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638134781 |
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| Product | trimethylamine-N-oxide reductase TorA |
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| Protein accession | YP_750678 |
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| Protein GI | 114563165 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0243] Anaerobic dehydrogenases, typically selenocysteine-containing |
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| TIGRFAM ID | [TIGR00509] molybdopterin guanine dinucleotide-containing S/N-oxide reductases
[TIGR02164] trimethylamine-N-oxide reductase TorA |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0339743 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACAGAA GACATTTTCT TAAAGGCTTA GTGGCGACTT CTTATGTTGG ACTAAGCAGT
ACATCAGTTT TGGCACCATT CAATGCCCTT GCAGCTGCGG GCACTAAAGC AAATGACGAC
TGGTTGACTA CCGGTTCGCA CTTTGGTGCA TTCAAGATGA AACGTAAGAA TGGCGTGATT
GACCAGGTGA TTCCATTTGA GTTGGACAAA TACCCTACCG ATATGATTAA TGGCGTTAAA
GGCTTAGTCT ACAACCCTTC ACGGGTTCGC TACCCTATGG TACGCCTAGA TTTTTTATTG
AAAGGTCATA AAAGCGATAC CAGTCAACGA GGTGATTTTC GCTTTGTCCG TGTCACTTGG
GATAAAGCAT TGACTCTGTT TAAAGATTCA CTTGATGAGG TACAGACTCA ATATGGCCCA
TCAGGACTGC ACGCAGGTCA AACTGGCTGG CGCGCCACTG GACAACTGCA TTCAAGTACC
AGTCACATGC AACGCGCTGT TGGAATGCAC GGTAATTTTG TCAAAAAAAT AGGTGACTAC
TCAACGGGTG CTGGCCAAAC TATTTTGCCT TATATTTTAG GTTCTACTGA AGTTTATGCC
CAAGGTACTT CATGGCCGTT GATCCTTGAG CAATCTAAAA CCATCATTTT GTGGTCAAAT
GATCCCTATA AAAACCTGCA AGTGGGTTGG AACGCCGAAA CCCATGAATC GTTCGCTTAT
CTAGCGGAGC TTAAAGAAAA AGTAAAACAA GGTAAGATCC GGGTGATCAG TATCGACCCA
GTGGTCACTA AAACCCAAAA ATACTTAGGC TGTGAGCAAC TTTACGTCAA CCCACAAACT
GACGTTGCGT TAATGCTGGG TATTGCCCAT GAAATGATCA CCAGTAAGTT ACACGATGAA
AAATTTATTG AGGGCTACAG CCTAGGTTTC GACAGATTCG TACCTTATAT TTTAGGCGAG
TCAGATAACG TAGCTAAAAC ACCAGAGTGG GCCAGTAAAA TTACTGGTGT TAGCCCTGAA
ATTATACGTG ATTTAGCTAA AGTGATGACC AAAGGTCGTA CTCAAATCAT GATGGGTTGG
TGTATTCAAC GTCAACAACA CGGTGAACAA CCTTATTGGA TGGCAGCTGT ACTTGCCACT
ATGATTGGCC AAATTGGTTT ACCTGGTGGT GGTATCAGCT ATGGCCATCA TTACTCAAGT
ATTGGTGTTC CTTCATCGGG CGCAGCGGCA CCGGGCGCGT TTCCTCGTAA TCTTGATGAA
GGCCAAAAGC CATTATTCGA CAGTAATGAT TTTAAAGGTG CGAGTAGCAC CATTCCGATT
GCACGTTGGA TTGATGCCAT TTTAGAACCG GGTAAAACCA TCGATGCCAA CGGGGCTAAG
GTCACTTATC CTGATATTAA GATGATGGTA TTTTCAGGTA ATAATCCATG GAGTCATCAC
CAAGATAGAA ATAAGATGAA GCAAGCATTT CAAAAGCTTG AATGTGTGGT CACTGTCGAC
ATTAACTGGA CAGCAACGTG CCGTTTCTCA GACATCGTTT TACCCGCTTG TACTACATTT
GAACGTAATG ACATTGACGT TTATGGCAGC TACGCTAACC GTGGTGTTTT AGCGATGCAA
AAAATGGTTG AACCATTATT TGATAGCTTG TCTGATTTTG ATATCTTTAC CCGCTTTGCC
AAAATAATGG GTAAAGAGAC AGAATATACC CGTGGCATGT CTGAATTTGA CTGGATTAAG
AAACTTTATA AGGACTGTAA AGCCGATAAT GCCGGTAAGT TCGATATGCC AAATTTCGAC
ACGTTCTGGA AACAAGGTTA TGTACATTTT GGTGAAGGCC AACCTTGGAC TCGCCATGCT
GACTTTAGGG ATGATCCTGA AATGAATCCA TTGGGTACAC CATCGGGCTT GATTGAAATT
TTCAGCCGTA AAATCGCCCA ATTCAATTAC GATGACTGTC CTGGCCATCC TACTTGGATA
GAAAAGTCAG AGCGCAGCCA TGGTGGTCCT GGTTCAGATA AATACCCAAT GTGGATGCAA
TCTTGCCACC CAGATAAACG CTTACATTCA CAAATGTGTG AGTCGCAGCA ATATCGGGAA
ACCTATACGG TACAAGGTCG TGAACCCGTG TACTTGAATC CTACCGATGC AAAACAGCGC
GGCATTAAAG ATGGCGATGT TGTTCGTGTG TTTAATGACC GAGGTCAACT GTTAGCGGGT
GCAGTGGTAT CCGACAGCTT CCCTAGTGGG GTTATCCGAA TTCATGAAGG GGCTTGGTAT
GGCCCAGTCG GTAAAGATGG GTCTAAAGAA GGCGGTAGTG AAATTGGGGC GTTGTGCAGC
TATGGTGACC CAAATACGTT AACGCAAGAT ATTGGTACAT CAAAGCTTGC CCAGGCTTGC
TCCGCATACA CTTGCTTGGT CGATTTCGAA AAGTATCAAG GTAAGTTACC TGACGTCAGT
TCTTTTAGTG GCCCAATAGA AACGCAGCTA TAA
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| Protein sequence | MNRRHFLKGL VATSYVGLSS TSVLAPFNAL AAAGTKANDD WLTTGSHFGA FKMKRKNGVI
DQVIPFELDK YPTDMINGVK GLVYNPSRVR YPMVRLDFLL KGHKSDTSQR GDFRFVRVTW
DKALTLFKDS LDEVQTQYGP SGLHAGQTGW RATGQLHSST SHMQRAVGMH GNFVKKIGDY
STGAGQTILP YILGSTEVYA QGTSWPLILE QSKTIILWSN DPYKNLQVGW NAETHESFAY
LAELKEKVKQ GKIRVISIDP VVTKTQKYLG CEQLYVNPQT DVALMLGIAH EMITSKLHDE
KFIEGYSLGF DRFVPYILGE SDNVAKTPEW ASKITGVSPE IIRDLAKVMT KGRTQIMMGW
CIQRQQHGEQ PYWMAAVLAT MIGQIGLPGG GISYGHHYSS IGVPSSGAAA PGAFPRNLDE
GQKPLFDSND FKGASSTIPI ARWIDAILEP GKTIDANGAK VTYPDIKMMV FSGNNPWSHH
QDRNKMKQAF QKLECVVTVD INWTATCRFS DIVLPACTTF ERNDIDVYGS YANRGVLAMQ
KMVEPLFDSL SDFDIFTRFA KIMGKETEYT RGMSEFDWIK KLYKDCKADN AGKFDMPNFD
TFWKQGYVHF GEGQPWTRHA DFRDDPEMNP LGTPSGLIEI FSRKIAQFNY DDCPGHPTWI
EKSERSHGGP GSDKYPMWMQ SCHPDKRLHS QMCESQQYRE TYTVQGREPV YLNPTDAKQR
GIKDGDVVRV FNDRGQLLAG AVVSDSFPSG VIRIHEGAWY GPVGKDGSKE GGSEIGALCS
YGDPNTLTQD IGTSKLAQAC SAYTCLVDFE KYQGKLPDVS SFSGPIETQL
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