| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1991 |
|---|
| Symbol | |
|---|
| ID | 4278903 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 2359247 |
|---|
| End bp | 2360320 |
|---|
| Gene Length | 1074 bp |
|---|
| Protein Length | 357 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 638134778 |
|---|
| Product | TMAO reductase system periplasmic protein TorT |
|---|
| Protein accession | YP_750675 |
|---|
| Protein GI | 114563162 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | [TIGR02955] TMAO reductase system periplasmic protein TorT |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCCGAC TTATTTATTT GCTCATAGCT TGCTTAGGGA CAATACCATT ACTTGCTGAG
GCTACATTAG ATTCTAGCTG GACATTACAA CAGCGGACGC CATTTAATGC CAAAATTCAA
ACAGTAAAAT CGATACAATA TAAACAACTG ACTTCGGCCA AAAAGCTTTG GCAGATCTGT
GCCTTAGTAC CTCACCTCAA AGATGCTTAT TGGATCGGCA TTGATTACGG TTTGGTGTCA
AAAGCCAGCC AATTAGGCAT TAATTTAGAA TTATTTGAAG CCGGCAGTTA TTACAGAAAA
GAGCAACAAC TAAAACAACT TGAATACTGC CTTAATCAGC CGTTCGATGC CATCTTACTC
GGTGCCGTGG CCCCTAATTT ACTTGATAAC TATCCGGGAC AGATTAATAA ACCCATCATA
GCGTTAGTGA ATAGACTCGA TAACCCCATG ATAACGACTC GTGTAGGCGT TAATTGGTAT
CAAATGGGCT GGGAAGCTGG CCACTTTATT GCTAAAGCTG TTAAAAAAAT ACCGCCATCA
TCTCCAGTAA CACTCGCACT ACTCACTGGT CCAGAAAGTG TTGGTGGCAG CGATTGGGTT
GAGCTCGGTA TTCAAGATGC TATTGCCAAT AGTCATATTG AGATTACATC AATTCGCCAT
ACCGATAATA ATCGTGACCT TTATCGTGAC CAACTTCATA ATCTGCTTAA TGATCATATT
CCTAGCTATA TTATAGGCAG TGCTGTTGCT ATCGAAGCAG CAATTGGAAC ATTGCAACAT
AAACAATTAA TTGGCCAAGT AAAGCTTGTG AGCAGTTATC TATCGCCAGC GACATTGCGA
GGACTGCATC GTAATAAAGT CGCTTTCAGC AGTGATGATC AAGTGGTGTT ACAAGGTAAA
TTAGCAATAG ACATCATGGT AAAACTACTT GAGGGAGCAC AATCATTTGG TGATATTGGC
CCACAAATAC AGGCGTTAGA ACAAGGAAAG GTGCAACTCG ATATGTTTAA TAACAGCTTA
GCCCCTGCAA GTTTTTACCC TATTTACCGC GTGACGCCAA AAACTAATCT TTAA
|
|---|
| Protein sequence | MRRLIYLLIA CLGTIPLLAE ATLDSSWTLQ QRTPFNAKIQ TVKSIQYKQL TSAKKLWQIC
ALVPHLKDAY WIGIDYGLVS KASQLGINLE LFEAGSYYRK EQQLKQLEYC LNQPFDAILL
GAVAPNLLDN YPGQINKPII ALVNRLDNPM ITTRVGVNWY QMGWEAGHFI AKAVKKIPPS
SPVTLALLTG PESVGGSDWV ELGIQDAIAN SHIEITSIRH TDNNRDLYRD QLHNLLNDHI
PSYIIGSAVA IEAAIGTLQH KQLIGQVKLV SSYLSPATLR GLHRNKVAFS SDDQVVLQGK
LAIDIMVKLL EGAQSFGDIG PQIQALEQGK VQLDMFNNSL APASFYPIYR VTPKTNL
|
|---|
| |