| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1986 |
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| Symbol | |
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| ID | 4278898 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 2353623 |
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| End bp | 2354546 |
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| Gene Length | 924 bp |
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| Protein Length | 307 aa |
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| Translation table | 11 |
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| GC content | 35% |
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| IMG OID | 638134773 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_750670 |
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| Protein GI | 114563157 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGATCACCA CGCTAAAGAG TAAACCCAAC AGTCATACAG CATTCGATTA CTCTCCGGAT
AATTTTCAGT GCGGTGCTTT AGTCACCAAT GCATCAAACA TTATTATTTA TGTAAACACA
TACTTTACCG ACGAACTATT GTGGAAGCCG GGGCAACTTA TTGGCAAAAA TGCTGATATC
ATTTTCACCC AATCTTCCAG AATATTTTTT CAAAGTTATT TAATTCCAAC ACTTTTACAC
GAACAAATTT GTGAAGAAAT GCAGCTGATT ATTTTTAATG CTGAAGGGTT GCGAATTCCG
ATAACGGTAA ATGCTCGTTT AAGCGATGAC GGCTGTATTT ATTGGAGTTT TTTCAATGCC
TCCAAAAGAG ACCAACTTTA TGATGAGTTA ATAAAAACAA GAGAAAAACT TGAGGAGCAA
GCTGAAAAAT TAAAATTACT TGCTTCAACT GATGAGTTAA CGCAGTTATT AAATAGAAGA
GAAATGAAAT ATCGTAGTAC GTTAGCACTT GAACAAGCGA CTCGATCGGA ACAATCTGTT
GGTTTATTAT TGTTAGATAT CGATCATTTT AAAATTATTA ATGACAGCTT TGGTCATTTA
GAAGGCGATC GAGTACTGAA AGAGCTCGGG CATATTTTGA AGAATTTTTG TAGACAAACC
GATCTTGTCT CTCGCTTTGG CGGCGAAGAA TTTTTGATAT TGCTACCCGA TACGAACAAA
AGTGATACTT TATTATTTTG TAACAGACTC CAAGACAGCA TCTCGCAAAT TAAAGTGGGT
GACGACGTAC TAACTGTCAG TATTGGGGTC AGCATTTGTG ATGATAAAAG ACAATTTACA
GATTTATTTA CTCAAGCGGA TAAAGCTATG TATAAAGCAA AAGCACTTGG AAGAAATAGA
ACTGAAATTT ATTGTTTGGA TTAA
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| Protein sequence | MITTLKSKPN SHTAFDYSPD NFQCGALVTN ASNIIIYVNT YFTDELLWKP GQLIGKNADI
IFTQSSRIFF QSYLIPTLLH EQICEEMQLI IFNAEGLRIP ITVNARLSDD GCIYWSFFNA
SKRDQLYDEL IKTREKLEEQ AEKLKLLAST DELTQLLNRR EMKYRSTLAL EQATRSEQSV
GLLLLDIDHF KIINDSFGHL EGDRVLKELG HILKNFCRQT DLVSRFGGEE FLILLPDTNK
SDTLLFCNRL QDSISQIKVG DDVLTVSIGV SICDDKRQFT DLFTQADKAM YKAKALGRNR
TEIYCLD
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